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In neural networks with identical neurons, the matrix of connection weights completely describes the network structure and thereby determines how it is processing information. However, due to the non-linearity of these systems, it is not…

Neurons and Cognition · Quantitative Biology 2018-11-14 Patrick Krauss , Alexandra Zankl , Achim Schilling , Holger Schulze , Claus Metzner

Networks are fundamental for our understanding of complex systems. Interactions between individual nodes in networks generate network motifs - small recurrent patterns that can be considered the network's building-block components,…

Dynamical Systems · Mathematics 2022-09-14 Miri Adler , Ruslan Medzhitov

A fundamental problem in mathematics and network analysis is to find conditions under which a graph can be partitioned into smaller pieces. The most important tool for this partitioning is the Fiedler vector or discrete Cheeger inequality.…

Social and Information Networks · Computer Science 2024-05-10 Sabyasachi Basu , Suman Kalyan Bera , C. Seshadhri

We study the problem of testing for community structure in networks using relations between the observed frequencies of small subgraphs. We propose a simple test for the existence of communities based only on the frequencies of three-node…

Methodology · Statistics 2017-10-17 Chao Gao , John Lafferty

Networks are a fundamental and flexible way of representing various complex systems. Many domains such as communication, citation, procurement, biology, social media, and transportation can be modeled as a set of entities and their…

Social and Information Networks · Computer Science 2020-08-07 Sumit Purohit , Lawrence B. Holder , George Chin

The existence of Steiner triple systems STS(n) of order n containing no nontrivial subsystem is well known for every admissible n. We generalize this result in two ways. First we define the expander property of 3-uniform hypergraphs and…

Combinatorics · Mathematics 2020-03-10 Zoltán L. Blázsik , Zoltán Lóránt Nagy

Background: Networks in different domains are characterized by similar global characteristics while differing in local structures. To further extend this concept, we investigated network regularities on a fine scale in order to examine the…

Molecular Networks · Quantitative Biology 2019-07-12 Alberto Calderone , Gianni Cesareni

The identification and counting of small graph patterns, called network motifs, is a fundamental primitive in the analysis of networks, with application in various domains, from social networks to neuroscience. Several techniques have been…

Social and Information Networks · Computer Science 2021-01-19 Ilie Sarpe , Fabio Vandin

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Graph neural networks are increasingly becoming the go-to approach in various fields such as computer vision, computational biology and chemistry, where data are naturally explained by graphs. However, unlike traditional convolutional…

Machine Learning · Computer Science 2021-10-28 Moshe Eliasof , Eldad Haber , Eran Treister

Most of the complex social, technological and biological networks have a significant community structure. Therefore the community structure of complex networks has to be considered as a universal property, together with the much explored…

Physics and Society · Physics 2014-12-02 Ginestra Bianconi , Richard K. Darst , Jacopo Iacovacci , Santo Fortunato

Network motifs are often called the building blocks of networks. Analysis of motifs is found to be an indispensable tool for understanding local network structure, in contrast to measures based on node degree distribution and its functions…

Physics and Society · Physics 2017-08-23 Asim Kumer Dey , Yulia R. Gel , H. Vincent Poor

Random graphs, where the connections between nodes are considered random variables, have wide applicability in the social sciences. Exponential-family Random Graph Models (ERGM) have shown themselves to be a useful class of models for…

Methodology · Statistics 2012-08-02 Ian Fellows , Mark S. Handcock

We introduce a new method for finding network motifs: interesting or informative subgraph patterns in a network. Subgraphs are motifs when their frequency in the data is high compared to the expected frequency under a null model. To compute…

Machine Learning · Computer Science 2021-04-19 Peter Bloem , Steven de Rooij

The study of the sub-structure of complex networks is of major importance to relate topology and functionality. Many efforts have been devoted to the analysis of the modular structure of networks using the quality function known as…

Data Analysis, Statistics and Probability · Physics 2011-07-01 Belkacem Serrour , Alex Arenas , Sergio Gomez

Many real-world phenomena are best represented as interaction networks with dynamic structures (e.g., transaction networks, social networks, traffic networks). Interaction networks capture flow of data which is transferred between their…

Social and Information Networks · Computer Science 2018-10-22 Chrysanthi Kosyfaki , Nikos Mamoulis , Evaggelia Pitoura , Panayiotis Tsaparas

Random network models play a prominent role in modeling, analyzing and understanding complex phenomena on real-life networks. However, a key property of networks is often neglected: many real-world networks exhibit spatial structure, the…

Quantitative Methods · Quantitative Biology 2017-02-07 John Lang , Hans De Sterck , Jamieson L. Kaiser , Joel C. Miller

Designing reliable networks consists in finding topological structures, which are able to successfully carry out desired processes and operations. When this set of activities performed within a network are unknown and the only available…

Optimization and Control · Mathematics 2014-09-22 Stefano Nasini

Graph Nerual Networks (GNNs) are effective models in graph embedding. It extracts shallow features and neighborhood information by aggregating neighbor information to learn the embedding representation of different nodes. However, the local…

Social and Information Networks · Computer Science 2023-12-14 Kejia Zhang

Biological and technological networks contain patterns, termed network motifs, which occur far more often than in randomized networks. Network motifs were suggested to be elementary building blocks that carry out key functions in the…

Molecular Networks · Quantitative Biology 2009-11-10 N. Kashtan , S. Itzkovitz , R. Milo , U. Alon
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