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Graphs are widely used for describing systems made up of many interacting components and for understanding the structure of their interactions. Various statistical models exist, which describe this structure as the result of a combination…

Methodology · Statistics 2021-06-28 Louis Duvivier , Rémy Cazabet , Céline Robardet

Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally…

Neurons and Cognition · Quantitative Biology 2017-03-10 Catalina Obando , Fabrizio De Vico Fallani

Motif counting plays a crucial role in understanding the structural properties of networks. By computing motif frequencies, researchers can draw key insights into the structural properties of the underlying network. As networks become…

Social and Information Networks · Computer Science 2025-03-26 Haozhe Yin , Kai Wang , Wenjie Zhang , Yizhang He , Ying Zhang , Xuemin Lin

Finding dense subnetworks, with density based on edges or more complex structures, such as subgraphs or $k$-cliques, is a fundamental algorithmic problem with many applications. While the problem has been studied extensively in static…

Data Structures and Algorithms · Computer Science 2024-06-26 Ilie Sarpe , Fabio Vandin , Aristides Gionis

Temporal graphs are structures which model relational data between entities that change over time. Due to the complex structure of data, mining statistically significant temporal subgraphs, also known as temporal motifs, is a challenging…

Social and Information Networks · Computer Science 2021-10-05 Antonio Longa , Giulia Cencetti , Bruno Lepri , Andrea Passerini

Clustering is the propensity of nodes that share a common neighbour to be connected. It is ubiquitous in many networks but poses many modelling challenges. Clustering typically manifests itself by a higher than expected frequency of…

Dynamical Systems · Mathematics 2016-01-07 Martin Ritchie , Luc Berthouze , Istvan Z. Kiss

In many data sets, crucial information on the structure and temporality of a system coexists with noise and non-essential elements. In networked systems, for instance, some edges might be non-essential or exist only by chance. Filtering…

Physics and Society · Physics 2019-01-16 Teruyoshi Kobayashi , Taro Takaguchi , Alain Barrat

This paper reviews, classifies and compares recent models for social networks that have mainly been published within the physics-oriented complex networks literature. The models fall into two categories: those in which the addition of new…

Physics and Society · Physics 2008-12-24 Riitta Toivonen , Lauri Kovanen , Mikko Kivelä , Jukka-Pekka Onnela , Jari Saramäki , Kimmo Kaski

Although stochastic resonance phenomena are ubiquitous across various complex systems, the influence mechanisms of higher-order interactions remain elusive. Here, we address this gap by investigating stochastic resonance in coupled phase…

Adaptation and Self-Organizing Systems · Physics 2026-03-16 Zheng Wang , Jinjie Zhu , Xianbin Liu

A class of random graphs is introduced and studied. The graphs are constructed in an algorithmic way from five motifs which were found in [Milo R., Shen-Orr S., Itzkovitz S., Kashtan N., Chklovskii D., Alon U., Science, 2002, 298, 824-827].…

Mathematical Physics · Physics 2011-06-23 M. Kotorowicz , Yu. Kozitsky

Motif counting is a fundamental problem in network analysis, and there is a rich literature of theoretical and applied algorithms for this problem. Given a large input network $G$, a motif $H$ is a small "pattern" graph indicative of…

Databases · Computer Science 2025-07-24 Omkar Bhalerao , Yunjie Pan , C. Seshadhri , Nishil Talati

Network motifs are overrepresented interconnection patterns found in real-world networks. What functional advantages may they offer for building complex systems? We show that most network motifs emerge from interconnections patterns that…

Systems and Control · Computer Science 2014-11-21 Marco Tulio Angulo , Yang-Yu Liu , Jean-Jacques Slotine

Modelling information from complex systems such as humans social interaction or words co-occurrences in our languages can help to understand how these systems are organized and function. Such systems can be modelled by networks, and network…

Computation and Language · Computer Science 2024-12-12 Thibault Prouteau , Nicolas Dugué , Simon Guillot

We propose a general framework for modelling network data that is designed to describe aspects of non-exchangeable networks. Conditional on latent (unobserved) variables, the edges of the network are generated by their finite growth history…

Statistics Theory · Mathematics 2020-07-29 Weichi Wu , Sofia Olhede , Patrick Wolfe

We consider the problem of estimating the topology of multiple networks from nodal observations, where these networks are assumed to be drawn from the same (unknown) random graph model. We adopt a graphon as our random graph model, which is…

Machine Learning · Statistics 2022-12-21 Madeline Navarro , Santiago Segarra

Topological features of gene regulatory networks can be successfully reproduced by a model population evolving under selection for short dynamical attractors. The evolved population of networks exhibit motif statistics, summarized by…

Molecular Networks · Quantitative Biology 2016-08-11 Burçin Danacı , Mehmet Ali Anıl , Ayşe Erzan

Natural and man-made transport webs are frequently dominated by dense sets of nested cycles. The architecture of these networks, as defined by the topology and edge weights, determines how efficiently the networks perform their function.…

Quantitative Methods · Quantitative Biology 2016-07-27 Carl D. Modes , Marcelo O. Magnasco , Eleni Katifori

We introduce Tiered Sampling, a novel technique for approximate counting sparse motifs in massive graphs whose edges are observed in a stream. Our technique requires only a single pass on the data and uses a memory of fixed size $M$, which…

Data Structures and Algorithms · Computer Science 2017-10-06 Lorenzo De Stefani , Erisa Terolli , Eli Upfal

Graphs are used to model interactions in a variety of contexts, and there is a growing need to quickly assess the structure of a graph. Some of the most useful graph metrics, especially those measuring social cohesion, are based on…

Social and Information Networks · Computer Science 2014-04-22 C. Seshadhri , Ali Pinar , Tamara G. Kolda

Balance theory explains the forces behind the structure of social systems, which are commonly modeled as static undirected signed networks. We expand this modeling approach to incorporate directionality of edges, and consider three levels…

Social and Information Networks · Computer Science 2020-07-21 Samin Aref , Ly Dinh , Rezvaneh Rezapour , Jana Diesner
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