Related papers: Non-Uniqueness of Minimal Superpermutations

We investigate permutations and involutions that avoid a pattern of length three and have a {\em unique} longest increasing subsequence.

We show that Closest Substring, one of the most important problems in the field of biological sequence analysis, is W[1]-hard when parameterized by the number k of input strings (and remains so, even over a binary alphabet). This problem is…

Let $S_n$ be the symmetric group of all permutations of $\{1, \cdots, n\}$ with two generators: the transposition switching $1$ with $2$ and the cyclic permutation sending $k$ to $k+1$ for $1\leq k\leq n-1$ and $n$ to $1$ (denoted by…

We obtain an explicit formula for the variance of the number of $k$-peaks in a uniformly random permutation. This is then used to obtain an asymptotic formula for the variance of the length of longest $k$-alternating subsequence in random…

Finding the longest common subsequence in $k$-length substrings (LCS$k$) is a recently proposed problem motivated by computational biology. This is a generalization of the well-known LCS problem in which matching symbols from two sequences…

Let the random variable $Z_{n,k}$ denote the number of increasing subsequences of length $k$ in a random permutation from $S_n$, the symmetric group of permutations of $\{1,...,n\}$. We show that $Var(Z_{n,k_n})=o((EZ_{n,k_n})^2)$ as $…

Let $\Sigma$ be an alphabet. For two strings $X$, $Y$, and a constrained string $P$ over the alphabet $\Sigma$, the constrained longest common subsequence and substring problem for two strings $X$ and $Y$ with respect to $P$ is to find a…

String consensus problems aim at finding a string that minimizes some given distance with respect to an input set of strings. In particular, in the Closest string problem, we are given a set of strings of equal length and a radius $d$. The…

For a given $n$, what is the smallest number $k$ such that every sequence of length $n$ is determined by the multiset of all its $k$-subsequences? This is called the $k$-deck problem for sequence reconstruction, and has been generalized to…

We introduce the following simpler variant of the Tur\'an problem: Given integers $n>k>r\geq 2$ and $m\geq 1$, what is the smallest integer $t$ for which there exists an $r$-uniform hypergraph with $n$ vertices, $t$ edges and $m$ connected…

Let $G$ be a graph on $n$ vertices, labeled $v_1,\ldots,v_n$ and $\pi$ be a permutation on $[n]:=\{1,2,\cdots, n\}$. Suppose that each pebble $p_i$ is placed at vertex $v_{\pi(i)}$ and has destination $v_i$. During each step, a disjoint set…

Given a string $T$ of length $n$ over an alphabet $\Sigma\subset \{1,2,\ldots,n^{O(1)}\}$ of size $\sigma$, we are to preprocess $T$ so that given a range $[i,j]$, we can return a representation of a shortest string over $\Sigma$ that is…

A simple permutation is one which maps no proper non-singleton interval onto an interval. We consider the enumeration of simple permutations from several aspects. Our results include a straightforward relationship between the ordinary…

We study a family of sorting match puzzles on grids, which we call permutation match puzzles. In this puzzle, each row and column of a $n \times n$ grid is labeled with an ordering constraint -- ascending (A) or descending (D) -- and the…

What is the length of the shortest sequence $S$ of reals so that the set of consecutive $n$-words in $S$ form a covering code for permutations on $\{1,2, >..., n\}$ of radius $R$ ? (The distance between two $n$-words is the number of…

Suppose we are given an infinite sequence of input cells, each initialized with a uniform random symbol from $[n]$. How hard is it to output a sequence in $[n]^n$ that is close to a uniform random permutation? Viola (SICOMP 2020)…

We consider the longest common subsequence problem in the context of subsequences with gap constraints. In particular, following Day et al. 2022, we consider the setting when the distance (i. e., the gap) between two consecutive symbols of…

A permutation may be represented by a collection of paths in the plane. We consider a natural class of such representations, which we call tangles, in which the paths consist of straight segments at 45 degree angles, and the permutation is…

Let $\mathcal{A}$ be a sequence of $rk$ terms which is made up of $k$ distinct integers each appearing exactly $r$ times in $\mathcal{A}$. The sum of all terms of a subsequence of $\mathcal{A}$ is called a subsequence sum of $\mathcal{A}$.…

Define Minimum Soapy Union (MinSU) as the following optimization problem: given a $k$-tuple $(X_1, X_2,..., X_k)$ of finite integer sets, find a $k$-tuple $(t_1, t_2,..., t_k)$ of integers that minimizes the cardinality of $(X_1 + t_1) \cup…