Related papers: Biospectrogram: a tool for spectral analysis of bi…
GenoML is a Python package automating machine learning workflows for genomics (genetics and multi-omics) with an open science philosophy. Genomics data require significant domain expertise to clean, pre-process, harmonize and perform…
BickGraphing is a browser based research tool that enables visual inspection of acoustic recordings. The tool was built in support of visualizing crop feeding pest sounds in support of the Insect Eavesdropper project; however, it is widely…
Summary: Mass spectrometry coupled to liquid chromatography (LC-MS/MS) is a powerful technique for the charac-terisation of proteomes. However, the diverse software platforms available for processing the raw proteomics data, each produce…
Hyperspectral imaging enables versatile applications due to its competence in capturing abundant spatial and spectral information, which are crucial for identifying substances. However, the devices for acquiring hyperspectral images are…
We describe the computer algebra software package SpectralSequences for the computer algebra system Macaulay2. This package implements many data types, objects and algorithms which pertain to, among other things, filtered complexes,…
Research in ultrasound imaging is limited in reproducibility by two factors: First, many existing ultrasound pipelines are protected by intellectual property, rendering exchange of code difficult. Second, most pipelines are implemented in…
We report our design, development, installation and troubleshooting of an open source Gnome X Scanning Microscopy (GXSM) software package for controlling and processing of modern Scanning Probe Microscopy (SPM) system as a development tool…
Optical spectroscopy is an important and widely used technique, for instance, to characterize new materials and to identify unknown compounds. Spectra are typically reported as a function of the wavelength of light, yet the information…
Recent technological advancements in data acquisition tools allowed life scientists to acquire multimodal data from different biological application domains. Broadly categorized in three types (i.e., sequences, images, and signals), these…
Summary: The DynaSig-ML (Dynamical Signatures - Machine Learning) Python package allows the efficient, user-friendly exploration of 3D dynamics-function relationships in biomolecules, using datasets of experimental measures from large…
The paper summarizes spectrogram and gives practical application of spectrogram in signal processing. For analysis, finger-snapping is recorded with a sampling rate of 441000 Hz and 96000 Hz. The effects of the number of segments on the…
RNA sequencing (RNA-seq) has been rapidly adopted for the profiling of transcriptomes in many areas of biology, including studies into gene regulation, development and disease. Of particular interest is the discovery of differentially…
Principal component analysis (PCA) is routinely used in population genetics to assess genetic structure. With chromosomal reference genomes and population-scale whole genome-sequencing becoming increasingly accessible, contemporary studies…
The work includes implementation and extraction algorithms capabilities test, without any additional data (starting position, the number of bits used, gap between the amount of data encoded) information from encoded files (mostly images).…
In this article we introduce PINGSoft, a set of IDL routines designed to visualise and manipulate, in an interactive and friendly way, Integral Field Spectroscopic data. The package is optimised for large databases and a fast visualisation…
Systems biology is an inter-disciplinary field that studies systems of biological components at different scales, which may be molecules, cells or entire organism. In particular, systems biology methods are applied to understand functional…
SpectraMatcher is a cross-platform desktop application for interactive comparison of experimental and computed vibronic spectra, designed to assist in the recognition and assignment of spectral patterns. It provides an intuitive graphical…
Biomedical signals are stored in many different data formats. Most formats have been developed for a specific purpose of a specialized community for ECG research, EEG analysis, sleep research, etc. So far none of the existing formats can be…
Oblique plane microscopy, OPM, is a form of lightsheet microscopy that permits volumetric imaging of biological samples at high temporal and spatial resolution. However, the imaging geometry of OPM, and related variants of light sheet…
A suite of acquisition applications related to the 4D-STEM technique is presented as a software package written within the Digital Micrograph environment, which is a widely used software platform in worldwide electron microscopy…