Related papers: A phase transition in energy-filtered RNA secondar…
Biomolecular folding, at least in simple systems, can be described as a two state transition in a free energy landscape with two deep wells separated by a high barrier. Transition paths are the short part of the trajectories that cross the…
Single crystals of LaFeAsO, NdFeAsO, and SmFeAsO have been prepared by means of a NaAs flux growth technique and studied by optical spectroscopy measurements. We show that the spectral features corresponding to the partial energy gaps in…
The topography of the free energy landscape in phase space of a dense hard sphere system characterized by a discretized free energy functional of the Ramakrishnan-Yussouff form is investigated numerically using a ``microcanonical'' Monte…
An energy-based model is developed to describe the periodic formation of voids/saddle reefs in hinge zones of chevron folds. Such patterns have been observed in a series of experiments on layers of paper, as well as in the field. A…
The ensemble of RNA secondary structures of uniform sequences is studied analytically. We calculate the partition function for very long sequences and discuss how the cross-over length, beyond which asymptotic scaling laws apply, depends on…
Many electronic structure methods rely on the minimization of the energy of the system with respect to the one-body reduced density matrix (1-RDM). To formulate a minimization algorithm, the 1-RDM is often expressed in terms of its…
The transmission characteristics of a spherical (possibly multilayered) particle of arbitrary size under focused illumination are discussed within the generalized Lorenz-Mie theory. Expressions generalizing the total extinction and…
Diffusionless phase transitions are at the core of the multifunctionality of (magnetic) shape memory alloys, ferroelectrics and multiferroics. Giant strain effects under external fields are obtained in low symmetric modulated martensitic…
We present a microscopic variational theory for the free energy surface of a fast folding protein that allows folding kinetics to be resolved to the residue level using Debye-Waller factors as local order parameters. We apply the method to…
Three-dimensional icosahedral random tilings with rhombohedral cells are studied in the semi-entropic model. We introduce a global energy measure defined by the variance of the quasilattice points in the orthogonal space. The internal…
The statistical mechanics of heteropolymer structure formation is studied in the context of RNA secondary structures. A designed RNA sequence biased energetically towards a particular native structure (a hairpin) is used to study the…
We examine how local streamline topology and energy cascade rate self-organize in plasma turbulence for both compressible and incompressible regimes. Using a fully-compressible Hall-magnetohydrodynamic simulation, we quantify the…
The electronic structure of NaFeAs is studied with angle resolved photoemission spectroscopy on high quality single crystals. Large portions of the band structure start to shift around the structural transition temperature, and smoothly…
The prototypical phase change material GeTe shows an enigmatic phase transition at Tc ca. 650 K from rhombohedral (R3m) to cubic (Fm-3m) symmetry. While local probes see little change in bonding, in contrast, average structure probes imply…
Recent experiments have shown that highly efficient energy transfer can take place in organic nanocrystals at extremely low acceptor densities. This striking phenomenon has been ascribed to the formation of exciton polaritons thanks to the…
We analyze different microscopic RNA models at zero temperature. We discuss both the most simple model, that suffers a large degeneracy of the ground state, and models in which the degeneracy has been remove, in a more or less severe…
In this paper we complete the study of global minimizers of a forced, non autonomous, one dimensional, phase transition model, initiated in [8]. Motivated by the recent findings in [9], revealing new configurations of topological structures…
We apply the thermal (imaginary time) perturbative expansion to the relevant effective field theory to compute characteristics of the phase transition to the ordered state which can occur at low temperatures in the gas of (nonrelativistic)…
The problem of finding the minimum-energy configuration of particles on a lattice, subject to a generic short-ranged repulsive interaction, is studied analytically. The study is relevant to charge ordered states of interacting fermions, as…
The Random Field Ising Model (RFIM) is the simplest physical model reflecting effect of quenched disorder on the different types of phase transitions in solids. The presence of multiple energy minima in the RFIM is an important feature…