English

Zero Temperature Properties of RNA Secondary Structures

Disordered Systems and Neural Networks 2009-11-07 v1 Statistical Mechanics Quantitative Methods

Abstract

We analyze different microscopic RNA models at zero temperature. We discuss both the most simple model, that suffers a large degeneracy of the ground state, and models in which the degeneracy has been remove, in a more or less severe manner. We calculate low-energy density of states using a coupling perturbing method, where the ground state of a modified Hamiltonian, that repels the original ground state, is determined. We evaluate scaling exponents starting from measurements of overlaps and energy differences. In the case of models without accidental degeneracy of the ground state we are able to clearly establish the existence of a glassy phase with θ1/3\theta \simeq 1/3.

Keywords

Cite

@article{arxiv.cond-mat/0111172,
  title  = {Zero Temperature Properties of RNA Secondary Structures},
  author = {Enzo Marinari and Andrea Pagnani and Federico Ricci-Tersenghi},
  journal= {arXiv preprint arXiv:cond-mat/0111172},
  year   = {2009}
}

Comments

20 pages including 9 eps figures

R2 v1 2026-07-22T10:30:08.209Z