English

Field Theory of the RNA Freezing Transition

Biomolecules 2015-05-13 v2 Disordered Systems and Neural Networks Genomics

Abstract

Folding of RNA is subject to a competition between entropy, relevant at high temperatures, and the random, or random looking, sequence, determining the low- temperature phase. It is known from numerical simulations that for random as well as biological sequences, high- and low-temperature phases are different, e.g. the exponent rho describing the pairing probability between two bases is rho = 3/2 in the high-temperature phase, and approximatively 4/3 in the low-temperature (glass) phase. Here, we present, for random sequences, a field theory of the phase transition separating high- and low-temperature phases. We establish the existence of the latter by showing that the underlying theory is renormalizable to all orders in perturbation theory. We test this result via an explicit 2-loop calculation, which yields rho approximatively 1.36 at the transition, as well as diverse other critical exponents, including the response to an applied external force (denaturation transition).

Keywords

Cite

@article{arxiv.0906.1472,
  title  = {Field Theory of the RNA Freezing Transition},
  author = {Francois David and Kay Joerg Wiese},
  journal= {arXiv preprint arXiv:0906.1472},
  year   = {2015}
}

Comments

96 pages, 188 figures. v2: minor corrections