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We consider chemical reaction networks modeled by a discrete state and continuous in time Markov process for the vector copy number of the species and provide a novel particle filter method for state and parameter estimation based on exact…

Molecular Networks · Quantitative Biology 2021-02-24 Muruhan Rathinam , Mingkai Yu

Importance sampling (IS) is a Monte Carlo technique for the approximation of intractable distributions and integrals with respect to them. The origin of IS dates from the early 1950s. In the last decades, the rise of the Bayesian paradigm…

Computation · Statistics 2024-06-21 Víctor Elvira , Luca Martino

Abundance estimates from animal point-count surveys require accurate estimates of detection probabilities. The standard model for estimating detection from removal-sampled point-count surveys assumes that organisms at a survey site are…

Populations and Evolution · Quantitative Biology 2019-04-09 Adam Martin-Schwarze , Jarad Niemi , Philip Dixon

Assuming that a reflected Ornstein-Uhlenbeck state process is observed at discrete time instants, we propose generalized moment estimators to estimate all drift and diffusion parameters via the celebrated ergodic theorem. With the sampling…

Statistics Theory · Mathematics 2020-09-14 Yaozhong Hu , Yuejuan Xi

We derive the observed information matrix of hidden Markov models by the application of the Oakes (1999)'s identity. The method only requires the first derivative of the forward-backward recursions of Baum and Welch (1970), instead of the…

Statistics Theory · Mathematics 2012-01-31 F. Bartolucci , A. Farcomeni , F. Pennoni

We study two statistical models for short-length categorical (or ordinal) time series. The first one is a regression model based on generalized linear model. The second one is a parametrized Markovian model, particularizing the discrete…

Statistics Theory · Mathematics 2016-08-14 Noëlle Bru , Laurence Despres , Christian Paroissin

Despite the recent development of methods dealing with partially observed epidemic dynamics (unobserved model coordinates, discrete and noisy outbreak data), limitations remain in practice, mainly related to the quantity of augmented data…

Applications · Statistics 2021-07-26 Romain Narci , Maud Delattre , Catherine Larédo , Elisabeta Vergu

We consider an evolving system for which a sequence of observations is being made, with each observation revealing additional information about current and past states of the system. We suppose each observation is made without error, but…

Computation · Statistics 2021-03-10 Valentina Di Marco , Jonathan Keith

Classical designs of randomized experiments, going back to Fisher and Neyman in the 1930s still dominate practice even in online experimentation. However, such designs are of limited value for answering standard questions in settings,…

To accurately quantify landslide hazard in a region of Turkey, we develop new marked point process models within a Bayesian hierarchical framework for the joint prediction of landslide counts and sizes. To accommodate for the dominant role…

Methodology · Statistics 2022-05-23 Rishikesh Yadav , Raphaël Huser , Thomas Opitz , Luigi Lombardo

Monitoring key elements of disease dynamics (e.g., prevalence, case counts) is of great importance in infectious disease prevention and control, as emphasized during the COVID-19 pandemic. To facilitate this effort, we propose a new…

Methodology · Statistics 2024-10-10 Lin Ge , Yuzi Zhang , Lance A. Waller , Robert H. Lyles

We consider the problem of estimating the sparse time-varying parameter vectors of a point process model in an online fashion, where the observations and inputs respectively consist of binary and continuous time series. We construct a novel…

Neural and Evolutionary Computing · Computer Science 2016-04-20 Alireza Sheikhattar , Jonathan B. Fritz , Shihab A. Shamma , Behtash Babadi

Gibbs-type random probability measures and the exchangeable random partitions they induce represent the subject of a rich and active literature. They provide a probabilistic framework for a wide range of theoretical and applied problems…

Statistics Theory · Mathematics 2015-04-06 Sergio Bacallado , Stefano Favaro , Lorenzo Trippa

A new iterative algorithm for solving initial data inverse problems from partial observations has been recently proposed in Ramdani, Tucsnak and Weiss [15]. Based on the concept of observers (also called Luenberger observers), this…

Numerical Analysis · Mathematics 2010-08-30 Ghislain Haine , Karim Ramdani

Sampling from distributions play a crucial role in aiding practitioners with statistical inference. However, in numerous situations, obtaining exact samples from complex distributions is infeasible. Consequently, researchers often turn to…

Computation · Statistics 2024-04-01 Riddhiman Bhattacharya , Tiefeng Jiang

We present a new design and inference method for estimating population size of a hidden population best reached through a link-tracing design. The strategy involves the Rao-Blackwell Theorem applied to a sufficient statistic markedly…

Methodology · Statistics 2014-11-26 Kyle Vincent , Steve Thompson

This paper considers the problem of estimation of the Fisher information for location from a random sample of size $n$. First, an estimator proposed by Bhattacharya is revisited and improved convergence rates are derived. Second, a new…

Information Theory · Computer Science 2020-05-08 Wei Cao , Alex Dytso , Michael Fauß , H. Vincent Poor , Gang Feng

The missing data problem pervasively exists in statistical applications. Even as simple as the count data in mortality projections, it may not be available for certain age-and-year groups due to the budget limitations or difficulties in…

Methodology · Statistics 2021-03-11 Rui Gong , Xiaoqian Sun , Leping Liu , Yu-Bo Wang

Extrapolation is defined as making predictions beyond the range of the data used to estimate a statistical model. In ecological studies, it is not always obvious when and where extrapolation occurs because of the multivariate nature of the…

Applications · Statistics 2019-12-09 Meridith L Bartley , Ephraim M Hanks , Erin M Schliep , Patricia A Soranno , Tyler Wagner

We consider estimating the transition probability matrix of a finite-state finite-observation alphabet hidden Markov model with known observation probabilities. The main contribution is a two-step algorithm; a method of moments estimator…

Systems and Control · Computer Science 2017-11-22 Robert Mattila , Cristian R. Rojas , Vikram Krishnamurthy , Bo Wahlberg