Related papers: Reconstructing Strings from Substrings with Quantu…
Suppose we have n algorithms, quantum or classical, each computing some bit-value with bounded error probability. We describe a quantum algorithm that uses O(sqrt{n}) repetitions of the base algorithms and with high probability finds the…
The ''trace reconstruction'' problem asks, given an unknown binary string $x$ and a channel that repeatedly returns ''traces'' of $x$ with each bit randomly deleted with some probability $p$, how many traces are needed to recover $x$? There…
A quantum algorithm is known that solves an unstructured search problem in a number of iterations of order $\sqrt{d}$, where $d$ is the dimension of the search space, whereas any classical algorithm necessarily scales as $O(d)$. It is shown…
We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…
A $\lambda$-cover of a string $S$ is a set of strings $\{C_i\}_1^\lambda$ such that every index in $S$ is contained in an occurrence of at least one string $C_i$. The existence of a $1$-cover defines a well-known class of quasi-periodic…
In the Shortest Common Superstring problem (SCS), one needs to find the shortest superstring for a set of strings. While SCS is NP-hard and MAX-SNP-hard, the Greedy Algorithm "choose two strings with the largest overlap; merge them; repeat"…
This paper presents an enhancement to Grover's search algorithm for instances where the number of items (or the size of the search problem) $N$ is not a power of 2. By employing an efficient algorithm for the preparation of uniform quantum…
In the beautifully simple-to-state problem of trace reconstruction, the goal is to reconstruct an unknown binary string $x$ given random "traces" of $x$ where each trace is generated by deleting each coordinate of $x$ independently with…
We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…
The Closest String Problem is an NP-complete problem which appears more commonly in bioinformatics and coding theory. Less surprisingly, classical approaches have been pursued with two prominent algorithms being the genetic algorithm and…
The Longest Common Subsequence (LCS) is a fundamental string similarity measure, and computing the LCS of two strings is a classic algorithms question. A textbook dynamic programming algorithm gives an exact algorithm in quadratic time, and…
We study the quantum complexity of the static set membership problem: given a subset S (|S| \leq n) of a universe of size m (m \gg n), store it as a table of bits so that queries of the form `Is x \in S?' can be answered. The goal is to use…
Given two strings $S$ and $P$, the Episode Matching problem is to find the shortest substring of $S$ that contains $P$ as a subsequence. The best known upper bound for this problem is $\tilde O(nm)$ by Das et al. (1997) , where $n,m$ are…
Quantum computation has attracted much attention since it was shown by Shor and Grover the possibility to implement quantum algorithms able to realize, respectively, factoring and searching in a faster way than any other known classical…
Let $S_1, S_2 \in \Sigma^*$ strings, we say that $S_1$ {\em jumble match} $S_2$ if they are permutations of each other. Given a text $T$ of size $N$ and a string $S \in \Sigma^*$, the problem of \emph{Jumbled Pattern Matching} (JPM) is to…
Quantum search is a quantum mechanical technique for searching N possibilities in only sqrt(N) steps. This has been proved to be the best possible algorithm for the exhuastive search problem in the sense the number of queries it requires…
We introduce the following natural generalization of trace reconstruction, parameterized by a deletion probability $\delta \in (0,1)$ and length $n$: There is a length $n$ string of probabilities, $S=p_1,\ldots,p_n,$ and each "trace" is…
We give an $\mathcal{O}(n \log n)$-time, $\mathcal{O}(n)$-space algorithm for factoring a string into the minimum number of palindromic substrings. That is, given a string $S [1..n]$, in $\mathcal{O}(n \log n)$ time our algorithm returns…
A new quantum algorithm for a search problem and its computational complexity are discussed. It is shown in the search problem containing 2^n objects that our algorithm runs in polynomial time.
A classic data structure problem is to preprocess a string T of length $n$ so that, given a query $q$, we can quickly find all substrings of T with Hamming distance at most $k$ from the query string. Variants of this problem have seen…