Related papers: Reconstructing Strings from Substrings with Quantu…
Given a pattern string $P$ of length $n$ and a query string $T$ of length $m$, where the characters of $P$ and $T$ are drawn from an alphabet of size $\Delta$, the {\em exact string matching} problem consists of finding all occurrences of…
We show how to determine whether a given pattern p of length m occurs in a given text t of length n in ${\tilde O}(\sqrt{n}+\sqrt{m})$\footnote{${\tilde O}$ allows for logarithmic factors in m and $n/m$} time, with inverse polynomial…
We propose a quantum string comparison method whose main building blocks are a specially designed oracle construction followed by Grover's search algorithm. The purpose of the oracle is to compare all alphabets of the string in parallel.…
We propose a new method for proving lower bounds on quantum query algorithms. Instead of a classical adversary that runs the algorithm with one input and then modifies the input, we use a quantum adversary that runs the algorithm with a…
The problem of reconstructing a sequence from the set of its length-$k$ substrings has received considerable attention due to its various applications in genomics. We study an uncoded version of this problem where multiple random sources…
The online square detection problem is to detect the first occurrence of a square in a string whose characters are provided as input one at a time. Recall that a square is a string that is a concatenation of two identical strings. In this…
The Binary Jumbled String Matching problem is defined as: Given a string $s$ over $\{a,b\}$ of length $n$ and a query $(x,y)$, with $x,y$ non-negative integers, decide whether $s$ has a substring $t$ with exactly $x$ $a$'s and $y$ $b$'s.…
Approximate Counting refers to the problem where we are given query access to a function $f : [N] \to \{0,1\}$, and we wish to estimate $K = #\{x : f(x) = 1\}$ to within a factor of $1+\epsilon$ (with high probability), while minimizing the…
This paper shows that, if we could examine the entire history of a hidden variable, then we could efficiently solve problems that are believed to be intractable even for quantum computers. In particular, under any hidden-variable theory…
A string $S[1,n]$ is a power (or tandem repeat) of order $k$ and period $n/k$ if it can decomposed into $k$ consecutive equal-length blocks of letters. Powers and periods are fundamental to string processing, and algorithms for their…
Given the vast reservoirs of data stored worldwide, efficient mining of data from a large information store has emerged as a great challenge. Many databases like that of intrusion detection systems, web-click records, player statistics,…
We study a variation of the classical Shortest Common Superstring (SCS) problem in which a shortest superstring of a finite set of strings $S$ is sought containing as a factor every string of $S$ or its reversal. We call this problem…
We study the problem of cutting a length-$n$ string of positive real numbers into $k$ pieces so that every piece has sum at least $b$. The problem can also be phrased as transforming such a string into a new one by merging adjacent numbers.…
The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…
Simon's problem is an essential example demonstrating the faster speed of quantum computers than classical computers for solving some problems. The optimal separation between exact quantum and classical query complexities for Simon's…
We revisit the classic combinatorial pattern matching problem of finding a longest common subsequence (LCS). For strings $x$ and $y$ of length $n$, a textbook algorithm solves LCS in time $O(n^2)$, but although much effort has been spent,…
Given two unsorted lists each of length N that have a single common entry, a quantum computer can find that matching element with a work factor of $O(N^{3/4}\log N)$ (measured in quantum memory accesses and accesses to each list). The…
We describe a method to upper bound the quantum query complexity of Boolean formula evaluation problems, using fundamental theorems about the general adversary bound. This nonconstructive method can give an upper bound on query complexity…
A tandem duplication denotes the process of inserting a copy of a segment of DNA adjacent to its original position. More formally, a tandem duplication can be thought of as an operation that converts a string $S = AXB$ into a string $T =…
We study variable time search, a form of quantum search where queries to different items take different time. Our first result is a new quantum algorithm that performs variable time search with complexity $O(\sqrt{T}\log n)$ where…