Related papers: Reconstructing Strings from Substrings with Quantu…
The problem of string reconstruction from substring information has found many applications due to its relevance in DNA- and polymer-based data storage. One practically important and challenging paradigm requires reconstructing mixtures of…
We consider the quantum complexities of the following three problems: searching an ordered list, sorting an un-ordered list, and deciding whether the numbers in a list are all distinct. Letting N be the number of elements in the input list,…
Recently, Ambainis gave an O(N^(2/3))-query quantum walk algorithm for element distinctness, and more generally, an O(N^(L/(L+1)))-query algorithm for finding L equal numbers. We point out that this algorithm actually solves a much more…
The Closest String Problem is an NP-hard problem that aims to find a string that has the minimum distance from all sequences that belong to the given set of strings. Its applications can be found in coding theory, computational biology, and…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…
In this note we study the number of quantum queries required to identify an unknown multilinear polynomial of degree d in n variables over a finite field F_q. Any bounded-error classical algorithm for this task requires Omega(n^d) queries…
$ $In its usual form, Grover's quantum search algorithm uses $O(\sqrt{N})$ queries and $O(\sqrt{N} \log N)$ other elementary gates to find a solution in an $N$-bit database. Grover in 2002 showed how to reduce the number of other gates to…
The goal of trace reconstruction is to reconstruct an unknown $n$-bit string $x$ given only independent random traces of $x$, where a random trace of $x$ is obtained by passing $x$ through a deletion channel. A Statistical Query (SQ)…
We present two new quantum algorithms that either find a triangle (a copy of $K_{3}$) in an undirected graph $G$ on $n$ nodes, or reject if $G$ is triangle free. The first algorithm uses combinatorial ideas with Grover Search and makes…
Quantum search is a quantum mechanical technique for searching N possibilities in only sqrt(N) steps. This paper gives a fresh perspective on the algorithm in terms of a resonance phenomenon which is implemented through classical coupled…
Quite often in database search, we only need to extract portion of the information about the satisfying item. Recently Radhakrishnan & Grover [RG] considered this problem in the following form: the database of $N$ items was divided into $K$…
In the oracle identification problem, we are given oracle access to an unknown N-bit string x promised to belong to a known set C of size M and our task is to identify x. We present a quantum algorithm for the problem that is optimal in its…
The problem of finding a center string that is `close' to every given string arises and has many applications in computational biology and coding theory. This problem has two versions: the Closest String problem and the Closest Substring…
The problem of reconstructing strings from substring information has found many applications due to its importance in genomic data sequencing and DNA- and polymer-based data storage. One practically important and challenging paradigm…
We study the quantum query complexity of the Boolean hidden shift problem. Given oracle access to f(x+s) for a known Boolean function f, the task is to determine the n-bit string s. The quantum query complexity of this problem depends…
A superstring of a set of strings correspond to a string which contains all the other strings as substrings. The problem of finding the Shortest Linear Superstring is a well-know and well-studied problem in stringology. We present here a…
We give a sublinear quantum algorithm for the longest common substring (LCS) problem on the run-length encoded (RLE) inputs, under the assumption that the prefix-sums of the runs are given. Our algorithm costs $\tilde{O}(n^{5/6})\cdot…
This paper gives a simple proof of why a quantum computer, despite being in all possible states simultaneously, needs at least 0.707 sqrt(N) queries to retrieve a desired item from an unsorted list of items. The proof is refined to show…
Let $G$ be an $n$-vertex graph with $m$ edges. When asked a subset $S$ of vertices, a cut query on $G$ returns the number of edges of $G$ that have exactly one endpoint in $S$. We show that there is a bounded-error quantum algorithm that…
String matching is a fundamental problem in computer science, with critical applications in text retrieval, bioinformatics, and data analysis. Among the numerous solutions that have emerged for this problem in recent decades,…