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Efficient path planning and navigation is critical for animals, robotics, logistics and transportation. We study a model in which spatial navigation problems can rapidly be solved in the brain by parallel mental exploration of alternative…

Neurons and Cognition · Quantitative Biology 2012-05-03 Filip Ponulak , John J. Hopfield

The bacterium E.Coli swims in a zig-zag manner, in a series of straight runs and tumbles occurring alternately, with the run-durations dependent on the local spatial gradient of chemo-attractants/repellants. This enables the organism to…

Cell Behavior · Quantitative Biology 2008-12-31 Melissa Reneaux , Manoj Gopalakrishnan

Routing strategies for traffics and vehicles have been historically studied. However, in the absence of considering drivers' preferences, current route planning algorithms are developed under ideal situations where all drivers are expected…

Robotics · Computer Science 2021-05-04 Jizhe Zhou , Qiwei Chen , Qin Li

Based on the properties of large-scale plume currents, an injection/suction control strategy is introduced to enhance the strength of plume currents and the turbulent transport of passive scalar in rotating plane Poiseuille flow. The…

Fluid Dynamics · Physics 2022-01-25 Shengqi Zhang , Zhenhua Xia , Shiyi Chen

The self-organization of microbial ecosystems involves a large variety of mechanisms, ranging from biochemical signaling to population dynamics. Among these, the role of motility regulation has been little studied, despite the importance of…

Statistical Mechanics · Physics 2025-03-18 Alberto Dinelli , Ada Altieri , Julien Tailleur

Liquid diodes are surface structures that facilitate the flow of liquids in a specific direction. When these structures are within the capillary regime, they promote liquid transport without the need for external forces. In nature, they are…

Soft Condensed Matter · Physics 2023-08-24 Camilla Sammartino , Yair Shokef , Bat-El Pinchasik

Like ants, some microorganisms are known to leave trails on surfaces to communicate. We explore how trail-mediated self-interaction could affect the behavior of individual microorganisms when diffusive spreading of the trail is negligible…

Biological Physics · Physics 2016-07-15 W. Till Kranz , Anatolij Gelimson , Kun Zhao , Gerard C. L. Wong , Ramin Golestanian

Detailed control over the motion of colloidal particles is relevant in many applications in colloidal science such as lab-on-a-chip devices. Here, we use an external magnetic field to assemble paramagnetic colloidal spheres into colloidal…

In many species, sucrose en route out of the leaf migrates from photosynthetically active mesophyll cells into the phloem down its concentration gradient via plasmodesmata, i.e., symplastically. In some of these plants the process is…

Biological Physics · Physics 2017-09-20 Jean Comtet , Robert Turgeon , Abraham D. Stroock

Traditional locomotion strategies become ineffective at low Reynolds numbers, where viscous forces predominate over inertial forces. To adapt, microorganisms have evolved specialized structures like cilia and flagella for efficient…

Robotics · Computer Science 2024-12-10 Nnamdi C. Chikere , Sofia Lozano Voticky , Quang D. Tran , Yasemin Ozkan-Aydin

Available possibilities to prevent a biped robot from falling down in the presence of severe disturbances are mainly Center of Pressure (CoP) modulation, step location and timing adjustment, and angular momentum regulation. In this paper,…

Robotics · Computer Science 2017-10-25 Fatemeh Nazemi , Aghil Yousefi-koma , Farzad A. shirazi , Majid Khadiv

The flow of cerebrospinal fluid through the perivascular spaces of the brain is believed to play a crucial role in eliminating toxic waste proteins. While the driving forces of this flow have been enigmatic, experiments have shown that…

Analysis of PDEs · Mathematics 2024-01-02 Ingeborg G. Gjerde , Miroslav Kuchta , Marie E. Rognes , Barbara Wohlmuth

Transport of molecular motors along protein filaments in a half-closed geometry is a common feature of biologically relevant processes in cellular protrusions. Using a lattice gas model we study how the interplay between active and…

Biological Physics · Physics 2017-03-30 Isabella R. Graf , Erwin Frey

A model of the regular arrangement of leaves on a plant stem (phyllotactic patterns) is proposed, based on a new plant pattern algorithm. Tripartite patterning is proposed to occur by the interaction of two signaling pathways. Each pathway…

Tissues and Organs · Quantitative Biology 2009-07-29 F. W. Cummings

We propose an evolutionary mechanism of phyllotaxis, regular arrangement of leaves on a plant stem. It is shown that the phyllotactic pattern with the Fibonacci sequence has a selective advantage, for it involves the least number of…

Biological Physics · Physics 2015-03-17 Takuya Okabe

Feed-forward dynamics, which is well-known to have several important implications in nonlinear dynamical systems, frequently occurs in gene expression motifs, and has been well explored experimentally and mathematically. However, dependency…

Molecular Networks · Quantitative Biology 2024-01-09 Priya Chakraborty , Ushasi Roy , Sayantari Ghosh

A trophallaxis inspired model for distributed transport between randomly interacting agents Trophallaxis, the regurgitation and mouth to mouth transfer of liquid food between members of eusocial insect societies, is an important process…

Biological Physics · Physics 2017-08-16 Johannes Gräwer , Henrik Ronellenfitsch , Marco G. Mazza , Eleni Katifori

Phycobilisomes (PBS) are massive structures that absorb and transfer light energy to photochemical reaction centers. Among the range of light harvesting systems, PBS are considered to be excellent solutions for absorption cross-sections but…

Biological Physics · Physics 2022-08-25 Emma Joy Dodson , Nicholas Werren , Yossi Paltiel , Erik Gauger , Nir Keren

Persistent activity is postulated to drive neural network plasticity and learning. To investigate its underlying cellular mechanisms, we developed a biophysically tractable model that explains the emergence, sustenance, and eventual…

Neurons and Cognition · Quantitative Biology 2009-11-13 Vladislav Volman , Richard Gerkin , Pak-Ming Lau , Eshel Ben-Jacob , Guo-Qiang Bi

Taking inspiration from the crawling motion of biological cells on a substrate, we consider a physical model of self-propulsion where the spatio-temporal driving can involve both, a mechanical actuation by active force couples, and a…

Soft Condensed Matter · Physics 2024-05-16 Pierre Recho , Lev Truskinovsky