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Robots still struggle to dynamically traverse complex 3-D terrain with many large obstacles, an ability required for many critical applications. Body-obstacle interaction is often inevitable and induces perturbation and uncertainty in…

In order to keep their cohesiveness during locomotion gregarious animals must make collective decisions. Many species boast complex societies with multiple levels of communities. A common case is when two dominant levels exist, one…

Biological Physics · Physics 2017-04-03 Bence Ferdinandy , Katalin Ozogány , Tamás Vicsek

Signal transduction pathways are largely conserved throughout the animal kingdom. The repertoire of pathways is limited and each pathway is used in different intercellular signaling events during the development of a given animal. For…

Populations and Evolution · Quantitative Biology 2016-08-16 Marie-Anne Félix

Inspired by biology's use of vesicles for targeted transport, many studies have propelled liposomes with active matter, creating synthetic systems that can be viewed as microscale biohybrid robots. Nevertheless, the underlying motility…

We have studied the collective motion of polar active particles confined to ellipsoidal surfaces. The geometric constraints lead to the formation of vortices that encircle surface points of constant curvature (umbilics). We have found that…

Soft Condensed Matter · Physics 2017-07-04 Sebastian Ehrig , Jonathan Ferracci , Richard Weinkamer , John W. C. Dunlop

At high concentration, free swimming nematodes known as vinegar eels ({\it Turbatrix aceti}), collectively exhibit metachronal waves near a boundary. We find that the frequency of the collective traveling wave is lower than that of the…

Soft Condensed Matter · Physics 2023-02-07 A. C. Quillen , A. Peshkov , Esteban Wright , Sonia McGaffigan

Numerous physical models have been proposed to explain how cell motility emerges from internal activity, mostly focused on how crawling motion arises from internal processes. Here we offer a classification of self-propulsion mechanisms…

Soft Condensed Matter · Physics 2020-03-05 Aurore Loisy , Jens Eggers , Tanniemola B. Liverpool

3D cell tracking in a living organism has a crucial role in live cell image analysis. Cell tracking in C. elegans has two difficulties. First, cell migration in a consecutive frame is large since they move their head during scanning.…

Computer Vision and Pattern Recognition · Computer Science 2024-03-21 Kaito Shiku , Hiromitsu Shirai , Takeshi Ishihara , Ryoma Bise

Recent experiments have shown that the nematode {\it T. aceti} can assemble into collectively undulating groups at the edge of fluid drops. This coordinated state consists of metachronal waves and drives fluid circulation inside the drop.…

We introduce a novel data-driven approach to discover and decode features in the neural code coming from large population neural recordings with minimal assumptions, using cohomological feature extraction. We apply our approach to neural…

Neurons and Cognition · Quantitative Biology 2018-09-11 Erik Rybakken , Nils Baas , Benjamin Dunn

We present a simple three-dimensional model to describe the autonomous expansion of a substrate which grows driven by the local mean curvature of its surface. The model aims to reproduce the nest construction process in arboreal…

Adaptation and Self-Organizing Systems · Physics 2020-02-11 Giulio Facchini , Alexandre Lazarescu , Andrea Perna , Stéphan Douady

Nematode species are well-known for their invariant cell lineage pattern during development. Combining knowledge about the fate specification induced by asymmetric division and the anti-correlation between cell cycle length and cell volume…

Cell Behavior · Quantitative Biology 2021-03-24 Guoye Guan , Ming-Kin Wong , Zhongying Zhao , Lei-Han Tang , Chao Tang

The stochastic exploration of the configuration space and the exploitation of functional states underlie many biological processes. The evolutionary dynamics stands out as a remarkable example. Here, we introduce a novel formalism that…

Biological Physics · Physics 2024-01-23 Vito Dichio , Fabrizio De Vico Fallani

Spiral waves are ubiquitous signatures of non equilibrium dynamics, appearing across chemical, biological, and active systems. Yet, in many living systems these waves unfold on curved and folded surfaces whose geometry has rarely been…

Soft Condensed Matter · Physics 2026-01-19 Varun Venkatesh , Farzan Vafa , Martin Cramer Pedersen , Amin Doostmohammadi

Recent research has shown that motile cells can adapt their mode of propulsion to the mechanical properties of the environment in which they find themselves--crawling in some environments while swimming in others. The latter can involve…

Biological Physics · Physics 2018-05-24 Hao Wu , Marco Avila Ponce de Leon , Hans G. Othmer

Here we report a surface curvature-induced directional movement phenomenon, based on molecular dynamics simulations, that a nanoscale water droplet at the outer surface of a graphene cone always spontaneously moves toward the larger end of…

Classical Physics · Physics 2010-11-17 Cunjing Lv , Chao Chen , Yajun Yin , Quanshui Zheng

Many animals, modern aircraft, and underwater vehicles use streamlined body shapes that reduce fluid dynamic drag to achieve fast and effective locomotion in air and water. Similarly, numerous small terrestrial animals move through…

Biological Physics · Physics 2025-09-16 Chen Li , Andrew O. Pullin , Duncan W. Haldane , Han K. Lam , Ronald S. Fearing , Robert J. Full

We present a high-throughput optogenetic illumination system capable of simultaneous closed-loop light delivery to specified targets in populations of moving Caenorhabditis elegans. The instrument addresses three technical challenges: it…

Neurons and Cognition · Quantitative Biology 2022-02-01 Mochi Liu , Sandeep Kumar , Anuj K Sharma , Andrew M Leifer

Complex networks characterized by global transport processes rely on the presence of directed paths from input to output nodes and edges, which organize in characteristic linked components. The analysis of such network-spanning structures…

Disordered Systems and Neural Networks · Physics 2015-05-13 M. Angeles Serrano , Paolo De Los Rios

Colloids and proteins alike can bind to lipid bilayers and move laterally in these two-dimensional fluids. Inspired by proteins that generate membrane curvature, sense the underlying membrane geometry, and migrate to high curvature sites,…