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Boolean networks have been successfully used in modelling gene regulatory networks. In this paper we propose a reduction method that reduces the complexity of a Boolean network but keeps dynamical properties and topological features and…

Quantitative Methods · Quantitative Biology 2009-07-06 Alan Veliz-Cuba

Multidimensional network data can have different levels of complexity, as nodes may be characterized by heterogeneous individual-specific features, which may vary across the networks. This paper introduces a class of models for…

Methodology · Statistics 2021-04-01 Silvia D'Angelo , Marco Alfò , Thomas Brendan Murphy

Distributed configuration management is imperative for wireless infrastructureless networks where each node adjusts locally its physical and logical configuration through information exchange with neighbors. Two issues remain open. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2008-09-12 Sung-eok Jeon , Chunayi Ji

Many complex systems can be described in terms of networks of interacting units. Recent studies have shown that a wide class of both natural and artificial nets display a surprisingly widespread feature: the presence of highly heterogeneous…

Disordered Systems and Neural Networks · Physics 2007-05-23 R. Ferrer i Cancho , R. V. Sole

What does the informational complexity of dynamical networked systems tell us about intrinsic mechanisms and functions of these complex systems? Recent complexity measures such as integrated information have sought to operationalize this…

Neural and Evolutionary Computing · Computer Science 2017-07-06 Xerxes D. Arsiwalla , Pedro A. M. Mediano , Paul F. M. J. Verschure

We investigate to what extent the degree sequence of a directed network constrains the number of driver nodes. We develop a pair of algorithms that take a directed degree sequence as input and aim to output a network with the maximum or…

Physics and Society · Physics 2020-03-24 Abdorasoul Ghasemi , Márton Pósfai , Raissa M. D'Souza

Realistic networks display heterogeneous transmission delays. We analyze here the limits of large stochastic multi-populations networks with stochastic coupling and random interconnection delays. We show that depending on the nature of the…

Mathematical Physics · Physics 2015-12-15 Jonathan Touboul

Complex systems in the real world can be modeled as a network of connected components. The human brain, as a network of neurons among which the interactions cause perception, is a complex network. Synchronization is a dynamical phenomenon…

Biological Physics · Physics 2019-04-30 Arefeh Mazarei , Mohammad Amirian Matlob , Gholamhossein Riazi , Yousef Jamali

Many quantities that characterize network elements are defined in an explicit form and calculated directly from the network structure; examples of include several centrality measures like degree, closeness, or betweenness. However, there…

Physics and Society · Physics 2026-01-08 János Török , Takashi Shimada , Fumiko Ogushi , Kata Tunyogi , János Kertész , Kimmo Kaski

Heterogeneous networks play a key role in the evolution of communities and the decisions individuals make. These networks link different types of entities, for example, people and the events they attend. Network analysis algorithms usually…

Computers and Society · Computer Science 2016-11-17 Rumi Ghosh , Kristina Lerman

We describe systems using Kauffman and similar networks. They are directed funct ioning networks consisting of finite number of nodes with finite number of discr ete states evaluated in synchronous mode of discrete time. In this paper we…

Disordered Systems and Neural Networks · Physics 2009-11-13 Andrzej Gecow

To model biological systems using networks, it is desirable to allow more than two levels of expression for the nodes and to allow the introduction of parameters. Various modeling and simulation methods addressing these needs using Boolean…

Molecular Networks · Quantitative Biology 2014-04-23 Yi Ming Zou

We consider a Gaussian statistical model whose parameter space is given by the variances of random variables. Underlying this model we identify networks by interpreting random variables as sitting on vertices and their correlations as…

Mathematical Physics · Physics 2015-06-17 Domenico Felice , Stefano Mancini , Marco Pettini

Recent research has provided a wealth of evidence highlighting the pivotal role of high-order interdependencies in supporting the information-processing capabilities of distributed complex systems. These findings may suggest that high-order…

Adaptation and Self-Organizing Systems · Physics 2023-05-24 Patricio Orio , Pedro A. M. Mediano , Fernando E. Rosas

Understanding the causes and effects of network structural features is a key task in deciphering complex systems. In this context, the property of network nestedness has aroused a fair amount of interest as regards ecological networks.…

Physics and Society · Physics 2013-09-23 Samuel Johnson , Virginia Dominguez-Garcia , Miguel A. Munoz

Performing multiple experiments is common when learning internal mechanisms of complex systems. These experiments can include perturbations to parameters or external disturbances. A challenging problem is to efficiently incorporate all…

Systems and Control · Computer Science 2020-08-25 Zuogong Yue , Johan Thunberg , Wei Pan , Lennart Ljung , Jorge Goncalves

The stability of Boolean networks has attracted much attention due to its wide applications in describing the dynamics of biological systems. During the past decades, much effort has been invested in unveiling how network structure and…

Physics and Society · Physics 2018-03-21 Jiannan Wang , Sen Pei , Wei Wei , Xiangnan Feng , Zhiming Zheng

We apply complex network analysis to the state spaces of random Boolean networks (RBNs). An RBN contains $N$ Boolean elements each with $K$ inputs. A directed state space network (SSN) is constructed by linking each dynamical state,…

Statistical Mechanics · Physics 2009-11-13 Amer Shreim , Andrew Berdahl , Vishal Sood , Peter Grassberger , Maya Paczuski

Observing and controlling complex networks are of paramount interest for understanding complex physical, biological and technological systems. Recent studies have made important advances in identifying sensor or driver nodes, through which…

We study the sample complexity of learning neural networks, by providing new bounds on their Rademacher complexity assuming norm constraints on the parameter matrix of each layer. Compared to previous work, these complexity bounds have…

Machine Learning · Computer Science 2019-11-19 Noah Golowich , Alexander Rakhlin , Ohad Shamir
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