Related papers: Tractability results for the Double-Cut-and-Join c…
Reconciling gene trees with a species tree is a fundamental problem to understand the evolution of gene families. Many existing approaches reconcile each gene tree independently. However, it is well-known that the evolution of gene families…
The K-way vertex cut problem} consists in, given a graph G, finding a subset of vertices of a given size, whose removal partitions G into the maximum number of connected components. This problem has many applications in several areas. It…
The {\em double-cut-and-join} (DCJ) operation, introduced by Yancopoulos \emph{et al.}, allows minimum edit distance to be computed by modeling all possible classical rearrangement operations, such as inversions, fusions, fissions,…
In the Minimum Clique Routing Problem on Cycles \textsc{MCRPC} we are given a cycle together with a set of demands (weighted origin-destination pairs) and the goal is to route all the pairs minimizing the maximum weighted clique of the…
We study a generalization of the well-known disjoint paths problem which we call the metric Menger problem, denoted MM(r,k), where one is given two subsets of a graph and must decide whether they can be connected by $k$ paths of pairwise…
The $k$-CombDMR problem is that of determining whether an $n \times n$ distance matrix can be realised by $n$ vertices in some undirected graph with $n + k$ vertices. This problem has a simple solution in the case $k=0$. In this paper we…
The MULTICUT problem, given a graph G, a set of terminal pairs T={(s_i,t_i) | 1 <= i <= r} and an integer p, asks whether one can find a cutset consisting of at most p non-terminal vertices that separates all the terminal pairs, i.e., after…
Direction relations between extended spatial objects are important commonsense knowledge. Recently, Goyal and Egenhofer proposed a formal model, known as Cardinal Direction Calculus (CDC), for representing direction relations between…
Given a directed graph $G$, a set of $k$ terminals and an integer $p$, the \textsc{Directed Vertex Multiway Cut} problem asks if there is a set $S$ of at most $p$ (nonterminal) vertices whose removal disconnects each terminal from all other…
The dicycle transversal number t(D) of a digraph D is the minimum size of a dicycle transversal of D, i. e. a set T of vertices of D such that D-T is acyclic. We study the following problem: Given a digraph D, decide if there is a dicycle B…
In the bounded-degree cut problem, we are given a multigraph $G=(V,E)$, two disjoint vertex subsets $A,B\subseteq V$, two functions $\mathrm{u}_A, \mathrm{u}_B:V\to \{0,1,\ldots,|E|\}$ on $V$, and an integer $k\geq 0$. The task is to…
The classic result by Fortune, Hopcroft, and Wyllie [TCS~'80] states that the directed disjoint paths problem is NP-complete even for two pairs of terminals. Extending this well-known result, we show that the directed disjoint paths problem…
The (Perfect) Matching Cut problem is to decide if a connected graph has a (perfect) matching that is also an edge cut. The Disconnected Perfect Matching problem is to decide if a connected graph has a perfect matching that contains a…
The (axis-parallel) stabbing number of a given set of line segments is the maximum number of segments that can be intersected by any one (axis-parallel) line. This paper deals with finding perfect matchings, spanning trees, or…
A matching is a set of edges in a graph with no common endpoint. A matching M is called acyclic if the induced subgraph on the endpoints of the edges in M is acyclic. Given a graph G and an integer k, Acyclic Matching Problem seeks for an…
Given an undirected graph $G$, a collection $\{(s_1,t_1),..., (s_k,t_k)\}$ of pairs of vertices, and an integer $p$, the Edge Multicut problem ask if there is a set $S$ of at most $p$ edges such that the removal of $S$ disconnects every…
We study a large family of graph covering problems, whose definitions rely on distances, for graphs of bounded cyclomatic number (that is, the minimum number of edges that need to be removed from the graph to destroy all cycles). These…
Let $S=\{K_{1,3},K_3,P_4\}$ be the set of connected graphs of size 3. We study the problem of partitioning the edge set of a graph $G$ into graphs taken from any non-empty $S'\subseteq S$. The problem is known to be NP-complete for any…
We study the classical problem of computing geometric thickness, i.e., finding a straight-line drawing of an input graph and a partition of its edges into as few parts as possible so that each part is crossing-free. Since the problem is…
In a graph, a (perfect) matching cut is an edge cut that is a (perfect) matching. Matching Cut (MC), respectively, Perfect Matching Cut (PMC), is the problem of deciding whether a given graph has a matching cut, respectively, a perfect…