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`Double edge swaps' transform one graph into another while preserving the graph's degree sequence, and have thus been used in a number of popular Markov chain Monte Carlo (MCMC) sampling techniques. However, while double edge-swaps can…
Given a pair of graphs with the same number of vertices, the inexact graph matching problem consists in finding a correspondence between the vertices of these graphs that minimizes the total number of induced edge disagreements. We study…
The problem of computing all maximal induced subgraphs of a graph G that have a graph property P, also called the maximal P-subgraphs problem, is considered. This problem is studied for hereditary, connected-hereditary and rooted-hereditary…
We study a class of graphs that represent local independence structures in stochastic processes allowing for correlated error processes. Several graphs may encode the same local independencies and we characterize such equivalence classes of…
We present a new family of models that is based on graphs that may have undirected, directed and bidirected edges. We name these new models marginal AMP (MAMP) chain graphs because each of them is Markov equivalent to some AMP chain graph…
We generalize subgraph densities, arising in dense graph limit theory, to Markov spaces (symmetric measures on the square of a standard Borel space). More generally, we define an analogue of the set of homomorphisms in the form of a measure…
Given a graph $G$, the maximal induced subgraphs problem asks to enumerate all maximal induced subgraphs of $G$ that belong to a certain hereditary graph class. While its optimization version, known as the minimum vertex deletion problem in…
With sufficient time, double edge-swap Markov chain Monte Carlo (MCMC) methods are able to sample uniformly at random from many different and important graph spaces. For instance, for a fixed degree sequence, MCMC methods can sample any…
We describe Markov interval maps via branching systems and develop the theory of relative branching systems, characterizing when the associated representations of relative graph C*-algebras are faithful. When the Markov interval maps $f$…
A graph is equimatchable if all of its maximal matchings have the same size. A graph is claw-free if it does not have a claw as an induced subgraph. In this paper, we provide, to the best of our knowledge, the first characterization of…
A polynomial-time exact algorithm for counting the number of directed acyclic graphs in a Markov equivalence class was recently given by Wien\"obst, Bannach, and Li\'skiewicz (AAAI 2021). In this paper, we consider the more general problem…
With a sequence of regressions, one may generate joint probability distributions. One starts with a joint, marginal distribution of context variables having possibly a concentration graph structure and continues with an ordered sequence of…
Markov chains are a convenient means of generating realizations of networks, since they require little more than a procedure for rewiring edges. If a rewiring procedure exists for generating new graphs with specified statistical properties,…
A problem from thermodynamic formalism for countable symbolic Markov chains is considered. It concerns asymptotic behavior of the equilibrium measures corresponding to increasing sequences of finite sub-matrices of an infinite nonnegative…
A subgraph is constructed by using a subset of vertices and edges of a given graph. There exist many graph properties that are hereditary for subgraphs. Hence, researchers from different communities have paid a great deal of attention in…
Let $G$ be an undirected graph on $n$ vertices and let $S(G)$ be the set of all $n \times n$ real symmetric matrices whose nonzero off-diagonal entries occur in exactly the positions corresponding to the edges of $G$. The inverse eigenvalue…
In observational studies, when a total causal effect of interest is not identified, the set of all possible effects can be reported instead. This typically occurs when the underlying causal DAG is only known up to a Markov equivalence…
A hollow matrix described by a graph $G$ is a real symmetric matrix having all diagonal entries equal to zero and with the off-diagonal entries governed by the adjacencies in $G$. For a given graph $G$, the determination of all possible…
This paper is concerned with the topological invariant of a graph given by the maximum degree of a Markov basis element for the corresponding graph model for binary contingency tables. We describe a degree four Markov basis for the model…
We consider the problem of uniformly generating a spanning tree, of a connected undirected graph. This process is useful to compute statistics, namely for phylogenetic trees. We describe a Markov chain for producing these trees. For cycle…