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The aim of this paper is to carry out a mathematical analysis of a system of ordinary differential equations introduced by R. Lev Bar-Or to model the interactions between T cells and macrophages. Under certain restrictions on the parameters…

Cell Behavior · Quantitative Biology 2010-06-15 Alan D. Rendall

A novel model of biological organisms is advanced, treating an organism as a self-consistent system subject to a pathogen flux. The principal novelty of the model is that it describes not some parts, but a biological organism as a whole.…

Biological Physics · Physics 2015-05-13 V. I. Yukalov , D. Sornette , E. P. Yukalova , J. -Y. Henry , J. P. Cobb

We consider the problem of determining multiple steady states for positive real values in models of biological networks. Investigating the potential for these in models of the mitogen-activated protein kinases (MAPK) network has consumed…

Many dynamical systems arising in biology and other areas exhibit multistationarity (two or more positive steady states with the same conserved quantities). Although deciding multistationarity for a polynomial dynamical system is an…

Molecular Networks · Quantitative Biology 2019-02-08 Alicia Dickenstein , Mercedes Perez Millan , Anne Shiu , Xiaoxian Tang

Multistationarity in biological systems is a mechanism of cellular decision making. In particular, signaling pathways regulated by protein phosphorylation display features that facilitate a variety of responses to different biological…

Subcellular Processes · Quantitative Biology 2011-07-05 Elisenda Feliu , Carsten Wiuf

In this paper results are obtained concerning the number of positive stationary solutions in simple models of the Calvin cycle of photosynthesis and the stability of these solutions. It is proved that there are open sets of parameters in a…

Subcellular Processes · Quantitative Biology 2016-04-25 Stefan Disselnkoetter , Alan D. Rendall

Parametrized polynomial ordinary differential equation systems are broadly used for modeling, specially in the study of biochemical reaction networks under the assumption of mass-action kinetics. Understanding the qualitative behavior of…

Molecular Networks · Quantitative Biology 2018-10-15 Elisenda Feliu

We consider a problem from biological network analysis of determining regions in a parameter space over which there are multiple steady states for positive real values of variables and parameters. We describe multiple approaches to address…

Symbolic Computation · Computer Science 2019-11-25 R. Bradford , J. H. Davenport , M. England , H. Errami , V. Gerdt , D. Grigoriev , C. Hoyt , M. Kosta , O. Radulescu , T. Sturm , A. Weber

Deciding whether and where a system of parametrized ordinary differential equations displays bistability, that is, has at least two asymptotically stable steady states for some choice of parameters, is a hard problem. For systems modeling…

Molecular Networks · Quantitative Biology 2020-08-31 Angélica Torres , Elisenda Feliu

Proposed to study the dynamics of physiological systems in which the evolution depends on the state in a previous time, the Mackey-Glass model exhibits a rich variety of behaviors including periodic or chaotic solutions in vast regions of…

Disordered Systems and Neural Networks · Physics 2021-12-22 Juan P. Tarigo , Cecilia Stari , Cecilia Cabeza , Arturo C. Marti

A nonlinear stochastic differential equation with the order of nonlinearity higher than one, with several discrete and distributed delays and time varying coefficients is considered. It is shown that the sufficient conditions for…

Probability · Mathematics 2018-10-25 Leonid Shaikhet

This paper deals with the stability analysis problem of discrete-time switched linear systems with ranged dwell time. A novel concept called L-switching-cycle is proposed, which contains sequences of multiple activation cycles satisfying…

Optimization and Control · Mathematics 2021-06-01 Weiming Xiang

The theory of backward bifurcations provides a criterion for the existence of positive steady states in epidemiological models with parameters where the basic reproductive ratio is less than one. It is often seen in simulations that this…

Dynamical Systems · Mathematics 2025-10-22 Alexis Nangue , Alan D. Rendall

The main subject of the thesis is the study of stationary nonequilibrium states trough the use of microscopic stochastic models that encode the physical interaction in the rules of Markovian dynamics for particles configurations. These…

Statistical Mechanics · Physics 2023-02-07 Leonardo De Carlo

Dynamics of many-body Hamiltonian systems with long range interactions is studied, in the context of the so called $\alpha-$HMF model. Building on the analogy with the related mean field model, we construct stationary states of the…

Statistical Mechanics · Physics 2010-04-15 Tineke L. Van Den Berg , Duccio Fanelli , Xavier Leoncini

This article studies a class of semilinear scalar field equations on the real line with variable coefficients in the linear terms. These coefficients are not necessarily small perturbations of a constant. We prove that under suitable…

Analysis of PDEs · Mathematics 2023-08-15 Mashael Alammari , Stanley Snelson

The analysis on stability and bifurcations in the macroscopic dynamics exhibited by the system of two coupled large populations comprised of $N$ stochastic excitable units each is performed by studying an approximate system, obtained by…

Chaotic Dynamics · Physics 2015-06-11 I. Franovic , K. Todorovic , N. Vasovic , N. Buric

The multisite phosphorylation-dephosphorylation cycle is a motif repeatedly used in cell signaling. This motif itself can generate a variety of dynamic behaviors like bistability and ultrasensitivity without direct positive feedbacks. In…

Quantitative Methods · Quantitative Biology 2011-11-09 Liming Wang , Eduardo D. Sontag

We introduce a two-dimensional Keller-Segel type free boundary model for motility of eukaryotic cells on substrates. The key ingredients of this model are the Darcy law for overdamped motion of the cytoskeleton (active) gel and Hele-Shaw…

Analysis of PDEs · Mathematics 2019-07-30 Leonid Berlyand , Volodymyr Rybalko

We show, theoretically and experimentally, the existence of a multi-stable regime in a nonlinear saturable coupler. In spite of its simplicity, we found that this model shows generic and fundamental properties of extended saturable…

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