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In this thesis we will present and discuss various results pertaining to tiling problems and mathematical logic, specifically computability theory. We focus on Wang prototiles, as defined in [32]. We begin by studying Domino Problems, and…
We outline the construction of a molecular system that could, in principle, implement a thermodynamically reversible Universal Turing Machine (UTM). By proposing a concrete-albeit idealised-design and operational protocol, we reveal…
We prove the computational intractability of rotating and placing $n$ square tiles into a $1 \times n$ array such that adjacent tiles are compatible--either equal edge colors, as in edge-matching puzzles, or matching tab/pocket shapes, as…
Working in Winfree's abstract tile assembly model, we show that a constant-size tile assembly system can be programmed through relative tile concentrations to build an n x n square with high probability, for any sufficiently large n. This…
Infinite time Turing machines with only one tape are in many respects fully as powerful as their multi-tape cousins. In particular, the two models of machine give rise to the same class of decidable sets, the same degree structure and, at…
We prove that for any infinite countable amenable group $G$, any $\epsilon > 0$ and any finite subset $K\subset G$, there exists a tiling (partition of $G$ into finite "tiles" using only finitely many "shapes"), where all the tiles are $(K;…
We consider staged self-assembly systems, in which square-shaped tiles can be added to bins in several stages. Within these bins, the tiles may connect to each other, depending on the glue types of their edges. Previous work by Demaine et…
The connection between self-assembly and computation suggests that a shape can be considered the output of a self-assembly ``program,'' a set of tiles that fit together to create a shape. It seems plausible that the size of the smallest…
We present an active tile assembly model which extends Winfree's abstract tile assembly model to tiles that are capable of transmitting and receiving binding site activation signals. In addition, we introduce a mathematical framework to…
We ask the question of how small a self-assembling set of tiles can be yet have interesting computational behaviour. We study this question in a model where supporting walls are provided as an input structure for tiles to grow along: we…
A physically-motivated genetic algorithm (GA) and full enumeration for a tile-based model of self-assembly (JaTAM) is implemented using a graphics processing unit (GPU). We observe performance gains with respect to state-of-the-art…
A particular, two-dimensional, tiling model, composed by the so called Wang tiles has been studied at finite temperature by Monte Carlo numerical simulations. In absence of any thermal bath the Wang tiles give the opportunity of building a…
Majumder, Reif and Sahu have presented a stochastic model of reversible, error-permitting, two-dimensional tile self-assembly, and showed that restricted classes of tile assembly systems achieved equilibrium in (expected) polynomial time.…
Constant bit-size Transformers are known to be Turing complete, but existing constructions require $\Omega(s(n))$ chain-of-thought (CoT) steps per simulated Turing machine (TM) step, leading to impractical reasoning lengths. In this paper,…
The number of distinguishable inherent structures of a liquid is the key component to understanding the thermodynamics of glass formers. In the case of hard potential systems such as hard discs, spheres and ellipsoids, an inherent structure…
The temperature inversion symmetry $R\to \frac{1}{T}$ is studied for the finite temperature effective potential of the N=1, $d=5$, supersymmetric $SU(3)_{c}{\times}SU(3)_{w}$ model, on the orbifold $S^{1}/Z_{2}$. For the value of the Wilson…
One of the most fundamental problems in tiling theory is the domino problem: given a set of tiles and tiling rules, decide if there exists a way to tile the plane using copies of tiles and following their rules. The problem is known to be…
We study the computational complexity theory of smooth, finite-dimensional dynamical systems. Building off of previous work, we give definitions for what it means for a smooth dynamical system to simulate a Turing machine. We then show that…
A tiling of the unit square is an MTP tiling if the smallest tile can tile all the other tiles. We look at the function $f(n)=\max \sum s_i$, where $s_i$ is the side length of the $i$th tile and the sum is taken over all MTP tilings with…
The Neural Turing Machine (NTM) is more expressive than all previously considered models because of its external memory. It can be viewed as a broader effort to use abstract external Interfaces and to learn a parametric model that interacts…