Related papers: Ideal, best packing, and energy minimizing double …
It is suggested that there is an interesting transition in double helices. The transition is between a helix, which has maximal torsion for the constituting helical strands, and a double helix which is nearly optimally packed illustrated by…
Optimal geometrical arrangements, such as the stacking of atoms, are of relevance in diverse disciplines. A classic problem is the determination of the optimal arrangement of spheres in three dimensions in order to achieve the highest…
This paper considers a two-hop network consisting of a source, two parallel half-duplex relay nodes, and two destinations. While the destinations have an adequate power supply, the source and relay nodes rely on harvested energy for data…
Closely packed conformations of helices formed on the ideal rope are considered. The pitch versus radius relations which define a closely packed helix are determined. The relations stem from the turn-to-turn distance and curvature limiting…
We consider planar networks of three curves that meet at two junctions with prescribed equal angles, minimizing a combination of the elastic energy and the length functional. We prove existence and regularity of minimizers, and we show some…
What is the optimal shape of a dendrite? Of course, optimality refers to some particular criterion. In this paper, we look at the case of a dendrite sealed at one end and connected at the other end to a soma. The electrical potential in the…
In this work we propose a model for DNA double helix within the tight-binding framework that incorporates the helicity of the molecules. We have studied localization properties of three DNAsequences,the periodic poly(dG)-poly(dC) and…
A design problem of finding an optimally stiff membrane structure by selecting one-dimensional fiber reinforcements is formulated and solved. The membrane model is derived in a novel manner from a particular three-dimensional linear elastic…
We consider the problem of minimizing a convex function over a subset of R^n that is not necessarily convex (minimization of a convex function over the integer points in a polytope is a special case). We define a family of duals for this…
We consider the rope climber fall problem in two different settings. The simplest formulation of the problem is when the climber falls from a given altitude and is attached to one end of the rope while the other end of the rope is attached…
A shape optimization problem arising from the optimal reinforcement of a membrane by means of one-dimensional stiffeners or from the fastest cooling of a two-dimensional object by means of ``conducting wires'' is considered. The criterion…
Motile eukaryotic cells propel themselves in viscous fluids by passing waves of bending deformation down their flagella. An infinitely long flagellum achieves a hydrodynamically optimal low-Reynolds number locomotion when the angle between…
We present a method for discovering dense packings of general convex hard particles and apply it to study the dense packing behavior of a one-parameter family of particles with tetrahedral symmetry representing a deformation of the ideal…
Nine stellarator configurations, three quasiaxisymmetric, three quasihelically symmetric and three non-quasisymmetric are scaled to ARIES-CS size and analyzed for energetic particle content. The best performing configurations with regard to…
A typical protein structure is a compact packing of connected alpha-helices and/or beta-strands. We have developed a method for generating the ensemble of compact structures a given set of helices and strands can form. The method is tested…
The binding of proteins onto DNA contributes to the shaping and packaging of genome as well as to the expression of specific genetic messages. With a view to understanding the interplay between the presence of proteins and the deformation…
Ribonucleic Acid (RNA) can fold into shapes that perform functions in the cell. These foldings are governed by Watson-Crick base pairing, namely Adenine to Uracil and Cytosine to Guanine (A-U and G-C). The properties of the H-P…
This paper shows a mathematical formalization, algorithms and computation software of volume optimal cycles, which are useful to understand geometric features shown in a persistence diagram. Volume optimal cycles give us concrete and…
Advances in DNA nanotechnology have stimulated the search for simple motifs that can be used to control the properties of DNA nanostructures. One such motif, which has been used extensively in structures such as polyhedral cages,…
We are concerned with a variant of the isoperimetric problem, which in our setting arises in a geometrically nonlinear two-well problem in elasticity. More precisely, we investigate the optimal scaling of the energy of an elastic inclusion…