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Quantum maps are fundamental to quantum information theory and open quantum systems. Covariant or weakly symmetric quantum maps, in particular, play a key role in defining quantum evolutions that respect thermodynamics, establish free…
Comparative genomics methods are widely used to aid the functional annotation of non coding DNA regions. However, aligning non coding sequences requires new algorithms and strategies, in order to take into account extensive rearrangements…
We analyze spectral properties of a quantum graph in the form of a ring chain with a $\delta$ coupling in the vertices exposed to a homogeneous magnetic field perpendicular to the graph plane. We find the band spectrum in the case when the…
Linkage maps are used to identify the location of genes responsible for traits and diseases. New sequencing techniques have created opportunities to substantially increase the density of genetic markers. Such revolutionary advances in…
In this paper we study a one parameter family of rational maps obtained by applying the Chebyshev-Halley root finding algorithms. We show that the dynamics near parameters where the family presents some degeneracy might be understood from…
Ordinary Coincidence Site Lattices (CSLs) are defined as the intersection of a lattice $\Gamma$ with a rotated copy $R\Gamma$ of itself. They are useful for classifying grain boundaries and have been studied extensively since the mid…
Complexity metrics and machine learning (ML) models have been utilized to analyze the lengths of segmental genomic entities like: exons, introns, intergenic and repeat/unique DNA sequences, in each of the 22 human chromosomes. The purpose…
Genomic signal processing has been used successfully in bioinformatics to analyze biomolecular sequences and gain varied insights into DNA structure, gene organization, protein binding, sequence evolution, etc. But challenges remain in…
We construct a mixing continuous piecewise linear map on [-1,1] with the property that a two-dimensional lattice made of these maps with a linear north and east nearest neighbour coupling admits a phase transition. We also provide a…
When high-dimensional non-uniformly hyperbolic chaotic systems undergo dynamical perturbations, their long-time statistics are generally observed to respond differentiably with respect to the perturbation. Although important in…
A continuous-time dynamical system with parameter $\varepsilon$ is nearly-periodic if all its trajectories are periodic with nowhere-vanishing angular frequency as $\varepsilon$ approaches 0. Nearly-periodic maps are discrete-time analogues…
The statistical properties of the quantum chaotic spectra have been studied, so far, only up to the second order correlation effects. The numerical as well as the analytical evidence that random matrix theory can successfully model the…
This paper investigates the chaotic properties of Arnol'd cat maps (ACMs) coupled on the nodes of a circulant graph. By demanding that the system's evolution matrix be symplectic, we determine the coupling matrix, which is naturally…
The sequences, given by a 7D map have been analysed by means of the methods, widely used to detect chaos in the real world in order to test their sensitivity to chaotic features of a non-linear system determined by comparatively high number…
Dynamical fluctuations or rare events associated with atypical trajectories in chaotic maps due to specific initial conditions can crucially determine their fate, as the may lead to stability islands or regions in phase space otherwise…
Heteroclinic cycles are widely used in neuroscience in order to mathematically describe different mechanisms of functioning of the brain and nervous system. Heteroclinic cycles and interactions between them can be a source of different…
It is a well-known fact that genetic sequences may contain sections with repeated units, called repeats, that differ in length over a population, with a length distribution of geometric type. A simple class of recombination models with…
We introduce a method to estimate the complexity function of symbolic dynamical systems from a finite sequence of symbols. We test such complexity estimator on several symbolic dynamical systems whose complexity functions are known exactly.…
We investigate a lattice of coupled logistic maps where, in addition to the usual diffusive coupling, an advection term parameterized by an asymmetry in the coupling is introduced. The advection term induces periodic behavior on a…
A nucleotides sequence is identified, in the two (four) letters alphabet, by the the labels of a vector state of an irreducible representation of U_q(sl(2)) (U_q(sl(2) + sl(2))), in the limit q -> 0. A master equation for the distribution…