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The coding and noncoding length sequences constructed from a complete genome are characterised by multifractal analysis. The dimension spectrum $D_{q}$ and its derivative, the 'analogous' specific heat $C_{q}$, are calculated for the coding…

Biological Physics · Physics 2009-11-07 Zu-Guo Yu , Vo Anh , Ka-Sing Lau

This paper introduces the notion of measure representation of DNA sequences. Spectral analysis and multifractal analysis are then performed on the measure representations of a large number of complete genomes. The main aim of this paper is…

Biological Physics · Physics 2009-11-07 Zu-Guo Yu , Vo Anh , Ka-Sing Lau

Differentiable conjugacies link dynamical systems that share properties such as the stability multipliers of corresponding orbits. It provides a stronger classification than topological conjugacy, which only requires qualitative similarity.…

Dynamical Systems · Mathematics 2023-03-02 P. A. Glendinning , D. J. W. Simpson

The logistic map is a paradigmatic dynamical system originally conceived to model the discrete-time demographic growth of a population, which shockingly, shows that discrete chaos can emerge from trivial low-dimensional non-linear dynamics.…

Chaotic Dynamics · Physics 2016-04-20 Alexandre L'Her , Pablo Amil , Nicolas Rubido , Arturo C. Marti , Cecilia Cabeza

The phase ordering properties of lattices of band-chaotic maps coupled diffusively with some coupling strength $g$ are studied in order to determine the limit value $g_e$ beyond which multistability disappears and non-trivial collective…

Disordered Systems and Neural Networks · Physics 2009-10-31 Anael Lemaitre , Hugues Chate

In this paper, we propose Complex Diffusion Maps (CDM), a novel diffusion mapping framework that aims to reveal the dominant complex harmonics of high-dimensional data. Inspired by the local Gaussian kernel relevant to the heat equation and…

Machine Learning · Computer Science 2026-05-05 Tongzhen Dang , Weiyang Ding , Michael K. Ng

Large-scale atomistic simulations can produce extreme volumes of information in the form of long trajectories. Reliably and automatically extracting key information from such datasets remains a formidable challenge, especially as it…

Computational Physics · Physics 2026-03-31 Rostyslav Hnatyshyn , Danny Perez

This article presents a systematic study of a class of maps between quasi-metric spaces that preserve left K-Cauchy sequences. We call such maps left K-Cauchy regular maps. Several characterizations of these maps have been given in terms of…

General Topology · Mathematics 2025-09-30 Om Dev Singh , Anubha Jindal

A semiclassical diagrammatic approach is constructed for calculating correlation functions of observables in open chaotic systems with time reversal symmetry. The results are expressed in terms of classical correlation functions involving…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 Oded Agam

We explore the chaotic dynamics of a large one-dimensional lattice of coupled maps with diffusive coupling of varying strength using the covariant Lyapunov vectors (CLVs). Using a lattice of diffusively coupled quadratic maps we quantify…

Chaotic Dynamics · Physics 2024-10-10 A. Raj , M. R. Paul

We apply to bidimensional chaotic maps the numerical method proposed by Ginelli et al. to approximate the associated Oseledets splitting, i.e. the set of linear subspaces spanned by the so called covariant Lyapunov vectors (CLV) and…

Chaotic Dynamics · Physics 2016-12-21 Matteo Sala , Cesar Manchein , Roberto Artuso

Biological organisms must learn how to control their own bodies to achieve deliberate locomotion, that is, predict their next body position based on their current position and selected action. Such learning is goal-agnostic with respect to…

Neural and Evolutionary Computing · Computer Science 2023-04-11 Nathan McDonald

Periodic patterns play the important regulatory and structural roles in genomic DNA sequences. Commonly, the underlying periodicities should be understood in a broad statistical sense, since the corresponding periodic patterns have been…

Quantitative Methods · Quantitative Biology 2011-04-05 V. R. Chechetkin

We investigate the spectral properties of chaotic quantum graphs. We demonstrate that the `energy'--average over the spectrum of individual graphs can be traded for the functional average over a supersymmetric non--linear $\sigma$--model…

Chaotic Dynamics · Physics 2009-11-11 Sven Gnutzmann , Alexander Altland

It is investigated how a spatial quenched disorder modifies the dynamics of coupled map lattices. The disorder is introduced via the presence or absence of coupling terms among lattice sites. Two nonlinear maps have been considered…

Statistical Mechanics · Physics 2009-11-11 Achille Giacometti , Maurice Rossi , Libero Battiston

A simple construction is presented, which generalises piecewise linear one-dimensional Markov maps to an arbitrary number of dimensions. The corresponding coupled map lattice, known as a simplicial mapping in the mathematical literature,…

chao-dyn · Physics 2009-10-30 Wolfram Just

Three quantitative measures of the spatiotemporal behavior of the coupled map lattices: reduced density matrix, reduced wave function, and an analog of particle number, have been introduced. They provide a quantitative meaning to the…

Chaotic Dynamics · Physics 2014-10-10 Maciej Janowicz , Arkadiusz Orłowski

We use a coarse-grained molecular model to study the self-assembly process of complexes of cationic and neutral lipids with DNA molecules ("lipoplexes") - a promising nonviral carrier of DNA for gene therapy. We identify the resulting…

Soft Condensed Matter · Physics 2011-05-31 Oded Farago , Niels Grønbech-Jensen

Analytical expressions for the width and conductance peak distributions of irregularly shaped quantum dots in the Coulomb blockade regime are presented in the limits of conserved and broken time-reversal symmetry. The results are obtained…

Condensed Matter · Physics 2009-10-28 Y. Alhassid , C. H. Lewenkopf

Chaotic maps are very important for establishing chaos-based image encryption systems. This paper introduces a coupling chaotic system based on a certain unit transform, which can combine any two 1D chaotic maps to generate a new one with…

Cryptography and Security · Computer Science 2019-09-19 Guozhen Hu , Baobin Li