English

Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome

Biological Physics 2009-11-07 v1 q-bio

Abstract

The coding and noncoding length sequences constructed from a complete genome are characterised by multifractal analysis. The dimension spectrum DqD_{q} and its derivative, the 'analogous' specific heat CqC_{q}, are calculated for the coding and noncoding length sequences of bacteria, where qq is the moment order of the partition sum of the sequences. From the shape of the % D_{q} and CqC_{q} curves, it is seen that there exists a clear difference between the coding/noncoding length sequences of all organisms considered and a completely random sequence. The complexity of noncoding length sequences is higher than that of coding length sequences for bacteria. Almost all DqD_{q} curves for coding length sequences are flat, so their multifractality is small whereas almost all DqD_{q} curves for noncoding length sequences are multifractal-like. We propose to characterise the bacteria according to the types of the CqC_{q} curves of their noncoding length sequences.

Cite

@article{arxiv.physics/0108053,
  title  = {Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome},
  author = {Zu-Guo Yu and Vo Anh and Ka-Sing Lau},
  journal= {arXiv preprint arXiv:physics/0108053},
  year   = {2009}
}

Comments

15 pages with 5 figures, Latex, Accepted for publication in Physica A

R2 v1 2026-07-22T18:51:54.701Z