English

Non-extensive Trends in the Size Distribution of Coding and Non-coding DNA Sequences in the Human Genome

Genomics 2009-11-11 v1

Abstract

We study the primary DNA structure of four of the most completely sequenced human chromosomes (including chromosome 19 which is the most dense in coding), using Non-extensive Statistics. We show that the exponents governing the decay of the coding size distributions vary between 5.2r5.75.2 \le r \le 5.7 for the short scales and 1.45q1.501.45 \le q \le 1.50 for the large scales. On the contrary, the exponents governing the decay of the non-coding size distributions in these four chromosomes, take the values 2.4r3.22.4 \le r \le 3.2 for the short scales and 1.50q1.721.50 \le q \le 1.72 for the large scales. This quantitative difference, in particular in the tail exponent qq, indicates that the non-coding (coding) size distributions have long (short) range correlations. This non-trivial difference in the DNA statistics is attributed to the non-conservative (conservative) evolution dynamics acting on the non-coding (coding) DNA sequences.

Keywords

Cite

@article{arxiv.q-bio/0510021,
  title  = {Non-extensive Trends in the Size Distribution of Coding and Non-coding DNA Sequences in the Human Genome},
  author = {Th. Oikonomou and A. Provata},
  journal= {arXiv preprint arXiv:q-bio/0510021},
  year   = {2009}
}

Comments

13 pages, 10 figures, 2 tables