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Networks are abundant in biological systems. Small sized over-represented network motifs have been discovered, and it has been suggested that these constitute functional building blocks. We ask whether larger dynamical network motifs exist…

Neural and Evolutionary Computing · Computer Science 2018-09-25 C. H. Huck Yang , Rise Ooi , Tom Hiscock , Victor Eguiluz , Jesper Tegnér

Human brain dynamics can be profitably viewed through the lens of statistical mechanics, where neurophysiological activity evolves around and between local attractors representing preferred mental states. Many physically-inspired models of…

Neurons and Cognition · Quantitative Biology 2016-09-06 Arian Ashourvan , Shi Gu , Marcelo G. Mattar , Jean M. Vettel , Danielle S. Bassett

Modular neural networks outperform nonmodular neural networks on tasks ranging from visual question answering to robotics. These performance improvements are thought to be due to modular networks' superior ability to model the compositional…

Machine Learning · Computer Science 2025-03-12 Akhilan Boopathy , Sunshine Jiang , William Yue , Jaedong Hwang , Abhiram Iyer , Ila Fiete

Mutualistic interactions are vital constituents of ecological and socio-economic systems. Empirical studies have found that the patterns of reciprocal relations among the participants often shows the salient features of being simultaneously…

Populations and Evolution · Quantitative Biology 2018-12-17 Weiran Cai , Jordan Snyder , Alan Hastings , Raissa M. D'Souza

Training a Neural Network (NN) with lots of parameters or intricate architectures creates undesired phenomena that complicate the optimization process. To address this issue we propose a first modular approach to NN design, wherein the NN…

Machine Learning · Computer Science 2019-02-26 David Castillo-Bolado , Cayetano Guerra-Artal , Mario Hernandez-Tejera

Attractor neural network models of cortical decision-making circuits represent them as dynamical systems in the state space of neural firing rates with the attractors of the network encoding possible decisions. While the attractors of these…

Neurons and Cognition · Quantitative Biology 2025-08-12 Safaan Sadiq

The study of the sub-structure of complex networks is of major importance to relate topology and functionality. Many efforts have been devoted to the analysis of the modular structure of networks using the quality function known as…

Data Analysis, Statistics and Probability · Physics 2011-07-01 Belkacem Serrour , Alex Arenas , Sergio Gomez

The functional consequences of local and global dynamics can be very different in natural systems. Many such systems have a network description that exhibits strong local clustering as well as high communication efficiency, often termed as…

Biological Physics · Physics 2009-04-07 Raj Kumar Pan , Sitabhra Sinha

As new instances of nested organization --beyond ecological networks-- are discovered, scholars are debating around the co-existence of two apparently incompatible macroscale architectures: nestedness and modularity. The discussion is far…

Physics and Society · Physics 2018-06-13 Albert Solé-Ribalta , Claudio J. Tessone , Manuel S. Mariani , Javier Borge-Holthoefer

In a recent paper, Bassett et al. (2011) have analyzed the static and dynamic organization of functional brain networks in humans. We here focus on the first claim made in this paper, which states that the static modular structure of such…

Quantitative Methods · Quantitative Biology 2011-06-30 Cedric E. Ginestet , Jonny O'Muircheartaigh , Owen G. O'Daly , Andrew Simmons

A core aspect of human intelligence is the ability to learn new tasks quickly and switch between them flexibly. Here, we describe a modular continual reinforcement learning paradigm inspired by these abilities. We first introduce a visual…

Machine Learning · Computer Science 2017-12-13 Kevin T. Feigelis , Blue Sheffer , Daniel L. K. Yamins

Network motifs are the building blocks of complex networks and are significantly involved in the network dynamics such as information processing and local operations in the brain, biological marks for drug targets, identifying and…

Physics and Society · Physics 2023-04-25 Bnaya Gross , Shlomo Havlin , Baruch Barzel

A growing body of research indicates that structural plasticity mechanisms are crucial for learning and memory consolidation. Starting from a simple phenomenological model, we exploit a mean-field approach to develop a theoretical framework…

Neurons and Cognition · Quantitative Biology 2024-06-19 Gianmarco Tiddia , Luca Sergi , Bruno Golosio

While interdependent systems have usually been associated with increased fragility, we show that strengthening the interdependence between dynamical processes on different networks can make them more robust. By coupling the dynamics of…

Adaptation and Self-Organizing Systems · Physics 2017-08-09 R. K. Singh , Sitabhra Sinha

Attractor dynamics are a fundamental computational motif in neural circuits, supporting diverse cognitive functions through stable, self-sustaining patterns of neural activity. In these lecture notes, we review four key examples that…

Neurons and Cognition · Quantitative Biology 2026-01-30 Tala Fakhoury , Elia Turner , Sushrut Thorat , Athena Akrami

Collective behavior plays a key role in the function of a wide range of physical, biological, and neurological systems where empirical evidence has recently uncovered the prevalence of higher-order interactions, i.e., structures that…

Adaptation and Self-Organizing Systems · Physics 2022-06-14 Per Sebastian Skardal , Lluís Arola-Fernández , Dane Taylor , Alex Arenas

Recurrent neural networks (RNNs) trained on compositional tasks can exhibit functional modularity, in which neurons can be clustered by activity similarity and participation in shared computational subtasks. Unlike brains, these RNNs do not…

Neurons and Cognition · Quantitative Biology 2023-10-12 Ziming Liu , Mikail Khona , Ila R. Fiete , Max Tegmark

Quantity of organization in complex networks here is measured as the inverse of the average sum of physical actions of all elements per unit motion multiplied by the Planck's constant. The meaning of quantity of organization is the inverse…

Adaptation and Self-Organizing Systems · Physics 2013-09-03 Georgi Yordanov Georgiev

Generative mechanisms which lead to empirically observed structure of networked systems from diverse fields like biology, technology and social sciences form a very important part of study of complex networks. The structure of many…

Physics and Society · Physics 2015-12-03 Snehal M. Shekatkar , G. Ambika

Robustness is a measure of functional reliability of a system against perturbations. To achieve a good and robust performance, a system must filter out external perturbations by its internal priors. These priors are usually distilled in the…

Neurons and Cognition · Quantitative Biology 2024-08-06 Jing Yan , Yunxuan Feng , Wei Dai , Yaoyu Zhang