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Biological networks are customarily described as structurally robust. This means that they often function extremely well under large forms of perturbations affecting both the concentrations and the kinetic parameters. In order to explain…

Optimization and Control · Mathematics 2026-02-20 M. Ali Al-Radhawi , David Angeli , Eduardo Sontag

Networks are a fundamental tool for understanding and modeling complex systems in physics, biology, neuroscience, engineering, and social science. Many networks are known to exhibit rich, lower-order connectivity patterns that can be…

Social and Information Networks · Computer Science 2018-01-08 Austin R. Benson , David F. Gleich , Jure Leskovec

Random Boolean networks (RBNs) have been a popular model of genetic regulatory networks for more than four decades. However, most RBN studies have been made with random topologies, while real regulatory networks have been found to be…

Cellular Automata and Lattice Gases · Physics 2015-03-17 Rodrigo Poblanno-Balp , Carlos Gershenson

Problem-solving competence at group level is influenced by the structure of the social networks and so it may shed light on the organization patterns of gregarious animals. Here we use an agent-based model to investigate whether the…

Social and Information Networks · Computer Science 2017-05-30 Sandro M. Reia , José F. Fontanari

Higher-order networks, naturally described as hypergraphs, are essential for modeling real-world systems involving interactions among three or more entities. Stochastic block models offer a principled framework for characterizing mesoscale…

Social and Information Networks · Computer Science 2025-11-27 Kazuki Nakajima , Yuya Sasaki , Takeaki Uno , Masaki Aida

Emerging evidence shows that the modular organization of the human brain allows for better and efficient cognitive performance. Many of these cognitive functions are very fast and occur in subsecond time scale such as the visual object…

Neurons and Cognition · Quantitative Biology 2018-08-01 J. Rizkallah , P. Benquet , A. Kabbara , O. Dufor , F. Wendling , M. Hassan

The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

Biological Physics · Physics 2015-05-13 Sitabhra Sinha

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of…

Molecular Networks · Quantitative Biology 2009-11-13 Jiankui He , Jun Sun , Michael W. Deem

Disorder and noise in physical systems often disrupt spatial and temporal regularity, yet chaotic systems reveal how order can emerge from unpredictable behavior. Complex networks, spatial analogs of chaos, exhibit disordered, non-Euclidean…

Statistical Mechanics · Physics 2025-04-17 Pablo Villegas

The mechanisms by which modularity emerges in complex networks are not well understood but recent reports have suggested that modularity may arise from evolutionary selection. We show that finding the modularity of a network is analogous to…

Disordered Systems and Neural Networks · Physics 2009-11-10 Roger Guimera , Marta Sales-Pardo , Luis A. N. Amaral

To understand the structure of a large-scale biological, social, or technological network, it can be helpful to decompose the network into smaller subunits or modules. In this article, we develop an information-theoretic foundation for the…

Physics and Society · Physics 2007-05-23 Martin Rosvall , Carl T. Bergstrom

The brain can be considered as a system that dynamically optimizes the structure of anatomical connections based on the efficiency requirements of functional connectivity. To illustrate the power of this principle in organizing the…

Neurons and Cognition · Quantitative Biology 2024-02-07 Carlos Calvo Tapia , Valeriy A. Makarov Slizneva , Cees van Leeuwen

Behavioral changes in animals and humans, as a consequence of an error or a verbal instruction, can be extremely rapid. Improvement in behavioral performances are usually associated in machine learning and reinforcement learning to synaptic…

Neurons and Cognition · Quantitative Biology 2025-03-12 Cristiano Capone , Luca Falorsi

Objective: Brain is a fantastic organ that helps creature adapting to the environment. Network is the most essential structure of brain, but the capability of a simple network is still not very clear. In this study, we try to expound some…

Neurons and Cognition · Quantitative Biology 2019-11-05 Xiang Zou , Lie Yao , Donghua Zhao , Liang Chen , Ying Mao

Living organisms, ecosystems, and social systems are examples of complex systems in which robustness against inclusion of new elements is an essential feature. A recently proposed simple model has revealed a general mechanism by which such…

Adaptation and Self-Organizing Systems · Physics 2018-01-24 Fumiko Ogushi , János Kertész , Kimmo Kaski , Takashi Shimada

The human cognitive system exhibits remarkable flexibility and generalization capabilities, partly due to its ability to form low-dimensional, compositional representations of the environment. In contrast, standard neural network…

Artificial Intelligence · Computer Science 2024-02-29 Declan Campbell , Jonathan D. Cohen

The brain is immensely complex, with diverse components and dynamic interactions building upon one another to orchestrate a wide range of functions and behaviors. Understanding patterns of these complex interactions and how they are…

Neurons and Cognition · Quantitative Biology 2024-08-06 Suman Kulkarni , Dani S. Bassett

Neural networks (NNs) whose subnetworks implement reusable functions are expected to offer numerous advantages, including compositionality through efficient recombination of functional building blocks, interpretability, preventing…

Neural and Evolutionary Computing · Computer Science 2021-03-09 Róbert Csordás , Sjoerd van Steenkiste , Jürgen Schmidhuber

We show that the full features of the dynamics towards the Feigenbaum attractor, present in all low-dimensional maps with a unimodal leading component, form a hierarchical construction with modular organization that leads to a clear-cut…

Chaotic Dynamics · Physics 2015-06-12 Alberto Robledo

We propose a method to decompose dynamical systems based on the idea that modules constrain the spread of perturbations. We find partitions of system variables that maximize 'perturbation modularity', defined as the autocovariance of…

Physics and Society · Physics 2022-11-22 Artemy Kolchinsky , Alexander J. Gates , Luis M. Rocha
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