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Scientific research is a major driving force in a knowledge based economy. Income, health and wellbeing depend on scientific progress. The better we understand the inner workings of the scientific enterprise, the better we can prompt,…

Digital Libraries · Computer Science 2015-03-12 Michael Ginda , Andrea Scharnhorst , Katy Borner

Bio-inspired neural networks are attractive for their adversarial robustness, energy frugality, and closer alignment with cortical physiology, yet they often lag behind back-propagation (BP) based models in accuracy and ability to scale. We…

Neural and Evolutionary Computing · Computer Science 2025-07-21 Imane Hamzaoui , Riyadh Baghdadi

Concepts in a certain domain of science are linked via intrinsic connections reflecting the structure of knowledge. To get a qualitative insight and a quantitative description of this structure, we perform empirical analysis and modeling of…

Digital Libraries · Computer Science 2021-08-10 Vasyl Palchykov , Mariana Krasnytska , Olesya Mryglod , Yurij Holovatch

for representing, characterizing, and modeling an ample range of structures and phenomena from both theoretical and applied perspectives. The present work describes the application of the recently introduced real-valued Jaccard and…

Physics and Society · Physics 2021-11-23 Luciano da F. Costa

Inspired by interdisciplinary work touching biology and microtribology, the authors propose a new, dynamic way of publishing research results, the establishment of a tree of knowledge and the localisation of scientific articles on this…

Digital Libraries · Computer Science 2010-01-11 I. C. Gebeshuber , B. Y Majlis

In this paper we present the application of a novel methodology to scientific citation and collaboration networks. This methodology is designed for understanding the governing dynamics of evolving networks and relies on an attachment…

Disordered Systems and Neural Networks · Physics 2009-09-29 Gabor Csardi , Katherine Strandburg , Laszlo Zalanyi , Jan Tobochnik , Peter Erdi

The question of citation behavior has always intrigued scientists from various disciplines. While general citation patterns have been widely studied in the literature we develop the notion of citation projection graphs by investigating the…

Digital Libraries · Computer Science 2010-04-21 Xiaolin Shi , Jure Leskovec , Daniel A. McFarland

A hierarchical structure describing the inter-relationships of species has long been a fundamental concept in systematic biology, from Linnean classification through to the more recent quest for a 'Tree of Life.' In this paper we use an…

Populations and Evolution · Quantitative Biology 2009-08-21 Andreas Dress , Vincent Moulton , Mike Steel , Taoyang Wu

Identification of different neuronal cell types is critical for understanding their contribution to brain functions. Yet, automated and reliable classification of neurons remains a challenge, primarily because of their biological…

Neural and Evolutionary Computing · Computer Science 2020-09-29 Eirini Troullinou , Grigorios Tsagkatakis , Spyridon Chavlis , Gergely Turi , Wen-Ke Li , Attila Losonczy , Panagiotis Tsakalides , Panayiota Poirazi

To account for strong aging characteristics of citation networks, we modify Google's PageRank algorithm by initially distributing random surfers exponentially with age, in favor of more recent publications. The output of this algorithm,…

Physics and Society · Physics 2009-11-13 Dylan Walker , Huafeng Xie , Koon-Kiu Yan , Sergei Maslov

Biogeographical regions (bioregions) reveal how different sets of species are spatially grouped and therefore are important units for conservation, historical biogeography, ecology and evolution. Several methods have been developed to…

Quantitative Methods · Quantitative Biology 2016-12-01 Daniel Edler , Thaís Guedes , Alexander Zizka , Martin Rosvall , Alexandre Antonelli

Searching, filtering and analysing scientific literature are time-consuming tasks when performing a systematic literature review. With the rise of artificial intelligence, some steps in the review process are progressively being automated.…

Artificial Intelligence · Computer Science 2025-09-30 José de la Torre-López , Aurora Ramírez , José Raúl Romero

Understanding the nature and organization of scientific communities is of broad interest. The `Invisible College' is a historical metaphor for one such type of community and the search for such `colleges' can be framed as the detection and…

Digital Libraries · Computer Science 2022-02-28 Shreya Chandrasekharan , Mariam Zaka , Stephen Gallo , Tandy Warnow , George Chacko

In recent years there has been a growing interest in the role of networks and clusters in the global economy. Despite being a popular research topic in economics, sociology and urban studies, geographical clustering of human activity has…

Physics and Society · Physics 2015-05-19 Roberto Catini , Dmytro Karamshuk , Orion Penner , Massimo Riccaboni

Change is a fundamental ingredient of interaction patterns in biology, technology, the economy, and science itself: Interactions within and between organisms change; transportation patterns by air, land, and sea all change; the global…

Physics and Society · Physics 2010-10-07 M. Rosvall , C. T. Bergstrom

Visualizing citation relations with network structures is widely used, but the visual complexity can make it challenging for individual researchers trying to navigate them. We collected data from 18 researchers with an interface that we…

Human-Computer Interaction · Computer Science 2024-12-30 Kiroong Choe , Eunhye Kim , Sangwon Park , Jinwook Seo

Ecological networks describe the interactions between different species, informing us of how they rely on one another for food, pollination and survival. If a species in an ecosystem is under threat of extinction, it can affect other…

Populations and Evolution · Quantitative Biology 2023-07-06 Chris Jones , Damaris Zurell , Karoline Wiesner

The study of neuronal morphology is important not only for its potential relationship with neuronal dynamics, but also as a means to classify diverse types of cells and compare than among species, organs, and conditions. In the present…

Neurons and Cognition · Quantitative Biology 2024-03-11 Alexandre Benatti , Henrique F. de Arruda , Luciano da F. Costa

Scientometric data is used to investigate empirically the emergence of search regimes in Biotechnology, Genomics, and Nanotechnology. Complex regimes can emerge when three independent sources of variance interact. In our model, researchers…

Adaptation and Self-Organizing Systems · Physics 2011-01-14 Gaston Heimeriks , Loet Leydesdorff

A primary motivation for our research in Digital Ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…

Neural and Evolutionary Computing · Computer Science 2016-11-18 G. Briscoe , S. Sadedin , G. Paperin