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The application of mathematics and statistical methods to scholarly communication: scientometrics, has facilitated the systematic analysis of the modern digital tide of literature. This chapter reviews three of such applications:…

Digital Libraries · Computer Science 2021-05-26 Julian D. Cortes , Zaida Chinchilla-Rodriguez , Katerina Bohle-Karbonell

Critical analysis of the state of the art is a necessary task when identifying new research lines worthwhile to pursue. To such an end, all the available work related to the field of interest must be taken into account. The key point is how…

Social and Information Networks · Computer Science 2017-02-09 C. Muñoz-Caro , A. Niño , S. Reyes

The authorship attribution is a problem of considerable practical and technical interest. Several methods have been designed to infer the authorship of disputed documents in multiple contexts. While traditional statistical methods based…

Computation and Language · Computer Science 2018-03-28 Jeaneth Machicao , Edilson A. Corrêa , Gisele H. B. Miranda , Diego R. Amancio , Odemir M. Bruno

A bibliometric approach is explored to tracking international scientific migration, based on an analysis of the affiliation countries of authors publishing in peer reviewed journals indexed in Scopus. The paper introduces a model that…

Digital Libraries · Computer Science 2014-06-24 Gali Halevi , Henk F. Moed

Citation analysis is one of the most frequently used methods in research evaluation. We are seeing significant growth in citation analysis through bibliometric metadata, primarily due to the availability of citation databases such as the…

Digital Libraries · Computer Science 2020-09-01 Sehrish Iqbal , Saeed-Ul Hassan , Naif Radi Aljohani , Salem Alelyani , Raheel Nawaz , Lutz Bornmann

Improvements in sequencing technologies and reduced experimental costs have resulted in a vast number of studies generating high-throughput data. Although the number of methods to analyze these "omics" data has also increased, computational…

Molecular Networks · Quantitative Biology 2017-09-19 Richard R. Rodrigues , Natalia Shulzhenko , Andrey Morgun

Bibliometrics such as the number of papers and times cited are often used to compare researchers based on specific criteria. The criteria, however, are different in each research domain and are set by empirical laws. Moreover, there are…

Digital Libraries · Computer Science 2017-08-07 Takahiro Kawamura , Yasuhiro Yamashita , Katsuji Matsumura

Nature has inspired various ground-breaking technological developments in applications ranging from robotics to aerospace engineering and the manufacturing of medical devices. However, accessing the information captured in scientific…

Computation and Language · Computer Science 2020-05-27 Ruben Kruiper , Julian F. V. Vincent , Jessica Chen-Burger , Marc P. Y. Desmulliez , Ioannis Konstas

Citation recommendation systems for the scientific literature, to help authors find papers that should be cited, have the potential to speed up discoveries and uncover new routes for scientific exploration. We treat this task as a ranking…

Information Retrieval · Computer Science 2020-01-24 Rodrigo Nogueira , Zhiying Jiang , Kyunghyun Cho , Jimmy Lin

Information exposing, in conjunction with technological innovations and the emergence of social media, altered the traditional roles of academic libraries and enabled librarians to become necessary partners in research. The role of academic…

Digital Libraries · Computer Science 2021-03-02 Peter Kokol , Jernej Završnik , Marko Turčin , Helena Blažun Vošner

Identifying measurable genetic indicators (or biomarkers) of a specific condition of a biological system is a key element of precision medicine. Indeed it allows to tailor diagnostic, prognostic and treatment choice to individual…

Machine Learning · Statistics 2016-12-16 Chloé-Agathe Azencott

Computational modeling is crucial for understanding and analyzing complex systems. In biology, model creation is a human dependent task that requires reading hundreds of papers and conducting wet lab experiments, which would take days or…

Quantitative Methods · Quantitative Biology 2021-10-22 Yasmine Ahmed , Natasa Miskov-Zivanov

In this study, we investigated the application of bio-inspired optimization algorithms, including Genetic Algorithm, Particle Swarm Optimization, and Whale Optimization Algorithm, for feature selection in chronic disease prediction. The…

Neural and Evolutionary Computing · Computer Science 2024-01-12 Abeer Dyoub , Ivan Letteri

Biomolecular networks have already found great utility in characterizing complex biological systems arising from pair-wise interactions amongst biomolecules. Here, we review how graph theoretical approaches can be applied not only for a…

Molecular Networks · Quantitative Biology 2018-12-03 Heeralal Janwa , Steven E. Massey , Julian Velev , Bud Mishra

Scientific journals are the repositories of the gradually accumulating knowledge of mankind about the world surrounding us. Just as our knowledge is organised into classes ranging from major disciplines, subjects and fields to increasingly…

Physics and Society · Physics 2015-08-13 Gergely Palla , Gergely Tibély , Enys Mones , Péter Pollner , Tamás Vicsek

Modeling biological networks serves as both a major goal and an effective tool of systems biology in studying mechanisms that orchestrate the activities of gene products in cells. Biological networks are context specific and dynamic in…

Molecular Networks · Quantitative Biology 2014-02-20 Ye Tian , Bai Zhang , Eric P. Hoffman , Robert Clarke , Zhen Zhang , Ie-Ming Shih , Jianhua Xuan , David M. Herrington , Yue Wang

Due to the availability of references of research papers and the rich information contained in papers, various citation analysis approaches have been proposed to identify similar documents for scholar recommendation. Despite of the success…

Information Retrieval · Computer Science 2017-03-21 Han Tian , Hankz Hankui Zhuo

An important part of the analysis of bio-molecular networks is to detect different functional units. Different functions are reflected in a different evolutionary dynamics, and hence in different statistical characteristics of network…

Molecular Networks · Quantitative Biology 2007-05-23 Johannes Berg , Michael Lässig

Network science has become an essential interdisciplinary tool for understanding complex biological systems. However, because these systems undergo continuous, often stimulus-driven changes in both structure and function, traditional static…

Molecular Networks · Quantitative Biology 2025-05-19 Abir Khazaal , Fatemeh Vafaee

Recommendation system is such a platform that helps people to easily find out the things they need within a few seconds. It is implemented based on the preferences of similar users or items. In this digital era, the internet has provided us…

Information Retrieval · Computer Science 2024-10-01 Mahamudul Hasan , Anika Tasnim Islam , Nabila Islam