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The tasks of semantic web service (discovery, selection, composition, and execution) are supposed to enable seamless interoperation between systems, whereby human intervention is kept at a minimum. In the field of Web service description…
The Semantic Web works on the existing Web which presents the meaning of information as well-defined vocabularies understood by the people. Semantic Search, at the same time, works on improving the accuracy if a search by understanding the…
This Ontologies are widely used as a means for solving the information heterogeneity problems on the web because of their capability to provide explicit meaning to the information. They become an efficient tool for knowledge representation…
Nowadays, literature review is a necessary task when trying to solve a given problem. However, an exhaustive literature review is very time-consuming in today's vast literature landscape. It can take weeks, even if looking only for…
Despite technological and medical advances, the detection, interpretation, and treatment of cancer based on imaging data continue to pose significant challenges. These include inter-observer variability, class imbalance, dataset shifts,…
In the context of the emergent Web of Data, a large number of organizations, institutes and companies (e.g., DBpedia, Geonames, PubMed ACM, IEEE, NASA, BBC) adopt the Linked Data practices and publish their data utilizing Semantic Web (SW)…
The potential benefits of applying machine learning methods to -omics data are becoming increasingly apparent, especially in clinical settings. However, the unique characteristics of these data are not always well suited to machine learning…
With the considerable growth of linked data, researchers have focused on how to increase the availability of semantic web technologies to provide practical usages for real life systems. Question answering systems are an example of real-life…
Framing the investigation of diverse cancers as a machine learning problem has recently shown significant potential in multi-omics analysis and cancer research. Empowering these successful machine learning models are the high-quality…
Lymphoma diagnosis, particularly distinguishing between subtypes, is critical for effective treatment but remains challenging due to the subtle morphological differences in histopathological images. This study presents a novel hybrid deep…
OWL (Web Ontology Language) ontologies, which are able to represent both relational and type facts as standard knowledge graphs and complex domain knowledge in Description Logic (DL) axioms, are widely adopted in domains such as healthcare…
The abundant semi-structured data on the Web, such as HTML-based tables and lists, provide commercial search engines a rich information source for question answering (QA). Different from plain text passages in Web documents, Web tables and…
Cervical cancer, the fourth leading cause of cancer in women globally, requires early detection through Pap smear tests to identify precancerous changes and prevent disease progression. In this study, we performed a focused analysis by…
Cancer is a complex disease, the understanding and treatment of which are being aided through increases in the volume of collected data and in the scale of deployed computing power. Consequently, there is a growing need for the development…
The adoption of Semantic Web technologies, and in particular the Open Data initiative, has contributed to the steady growth of the number of datasets and triples accessible on the Web. Most commonly, queries over RDF data are evaluated over…
Ontologies form the basic interest in various computer science disciplines such as semantic web, information retrieval, database design, etc. They aim at providing a formal, explicit and shared conceptualization and understanding of common…
Precision medicine fundamentally aims to establish causality between dysregulated biochemical mechanisms and cancer subtypes. Omics-based cancer subtyping has emerged as a revolutionary approach, as different level of omics records the…
Semantic Web technology has successfully facilitated many RDF models with rich data representation methods. It also has the potential ability to represent and store multimodal knowledge bases such as multimodal scene graphs. However, most…
Cancer diagnosis and prognosis primarily depend on clinical parameters such as age and tumor grade, and are increasingly complemented by molecular data, such as gene expression, from tumor sequencing. However, sequencing is costly and…
Cancer is a complex disease driven by dynamic regulatory shifts that cannot be fully captured by individual molecular profiling. We employ a data-driven approach to construct a coarse-grained dynamic network model based on hallmark…