Related papers: An asymptotic sampling formula for the coalescent …
Obtaining a closed-form sampling distribution for the coalescent with recombination is a challenging problem. In the case of two loci, a new framework based on asymptotic series has recently been developed to derive closed-form results when…
Ewens' sampling formula (ESF) provides the probability distribution governing the number of distinct genetic types and their respective frequencies at a selectively neutral locus under the infinitely-many-alleles model of mutation. A…
The purpose of this article is to present a general method to find limiting laws for some renormalized statistics on random permutations. The model considered here is Ewens sampling model, which generalizes uniform random permutations. We…
We consider an infinitely-many neutral allelic model of population genetics where all alleles are divided into a finite number of classes, and each class is characterized by its own mutation rate. For this model the allelic composition of a…
For population genetics models with recombination, obtaining an exact, analytic sampling distribution has remained a challenging open problem for several decades. Recently, a new perspective based on asymptotic series has been introduced to…
In considering evolution of transcribed regions, regulatory modules, and other genomic loci of interest, we are often faced with a situation in which the number of allelic states greatly exceeds the population size. In this limit, the…
An involution is a bijection that is its own inverse. Given a permutation $\sigma$ of $[n],$ let $\mathsf{invol}(\sigma)$ denote the number of ways $\sigma$ can be expressed as a composition of two involutions of $[n].$ We prove that the…
The Ewens sampling formula was firstly introduced in the context of population genetics by Warren John Ewens in 1972, and has appeared in a lot of other scientific fields. There are abundant approximation results associated with the Ewens…
This paper develops an analogy between the cycle structure of, on the one hand, random permutations with cycle lengths restricted to lie in an infinite set $S$ with asymptotic density $\sigma$ and, on the other hand, permutations selected…
The Ewens sampling formula is a distribution related to the random partition of a positive integer. In this study, we investigate the issue of non-existence solutions in parameter estimation under the distribution. As a result, the first…
Stirling numbers of the first kind are common in number theory and combinatorics; through Ewen's sampling formula, these numbers enter into the calculation of several population genetics statistics, such as Fu's Fs. In previous papers we…
Many applications in genetic analyses utilize sampling distributions, which describe the probability of observing a sample of DNA sequences randomly drawn from a population. In the one-locus case with special models of mutation such as the…
The Ewens-Pitman sampling model (EP-SM) is a distribution for random partitions of the set $\{1,\ldots,n\}$, with $n\in\mathbb{N}$, which is index by real parameters $\alpha$ and $\theta$ such that either $\alpha\in[0,1)$ and…
The Ewens sampling formula with parameter $\alpha$ is the distribution on $S_n$ which gives each $\pi\in S_n$ weight proportional to $\alpha^{C(\pi)}$, where $C(\pi)$ is the number of cycles of $\pi$. We show that, for any fixed $\alpha$,…
We study the number of random permutations needed to invariably generate the symmetric group, $S_n$, when the distribution of cycle counts has the strong $\alpha$-logarithmic property. The canonical example is the Ewens sampling formula,…
We study asymptotic properties of expectation propagation (EP) -- a method for approximate inference originally developed in the field of machine learning. Applied to generalized linear models, EP iteratively computes a multivariate…
We work in the context of the infinitely many alleles model. The allelic partition associated with a coalescent process started from n individuals is obtained by placing mutations along the skeleton of the coalescent tree; for each…
We explore the asymptotic distributions of sequences of integer-valued additive functions defined on the symmetric group endowed with the Ewens probability measure as the order of the group increases. Applying the method of factorial…
Widely used models in genetics include the Wright-Fisher diffusion and its moment dual, Kingman's coalescent. Each has a multilocus extension but under neither extension is the sampling distribution available in closed-form, and their…
Many models of interest in the natural and social sciences have no closed-form likelihood function, which means that they cannot be treated using the usual techniques of statistical inference. In the case where such models can be…