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Systems with two species of active molecular motors moving on (cytoskeletal) filaments into opposite directions are studied theoretically using driven lattice gas models. The motors can unbind from and rebind to the filaments. Two motors…

Statistical Mechanics · Physics 2007-05-23 Stefan Klumpp , Reinhard Lipowsky

Active particles may undergo phase separation when interactions oppose self-propulsion, in the absence of any cohesive forces. The corresponding Motility-Induced Phase Separation (MIPS) is arguably the simplest non-trivial collective…

Soft Condensed Matter · Physics 2023-12-19 Jérémy O'Byrne , Alexandre Solon , Julien Tailleur , Yongfeng Zhao

Catalysis-driven synthetic molecular motors operate in a loose mechanochemical coupling regime, one in which a decomposition of a fuel molecule does not reliably produce a forward step. In that regime, stochastic backward steps can…

Statistical Mechanics · Physics 2026-01-16 Geyao Gu , Drew Alvarez , John Strahan , Alex Albaugh , Emanuele Penocchio , Todd R. Gingrich

Simulations can help unravel the complicated ways in which molecular structure determines function. Here, we use molecular simulations to show how slight alterations of a molecular motor's structure can cause the motor's typical dynamical…

Statistical Mechanics · Physics 2023-08-21 Alex Albaugh , Geyao Gu , Todd R. Gingrich

A simple tight-coupling model of a molecular chemical engine is proposed. The efficiency of the chemical engine and its average velocity can be explicitly calculated. The diffusion constant is evaluated approximately using the fluctuation…

Statistical Mechanics · Physics 2009-11-11 Hidetsugu Sakaguchi

Linking the microscopic and macroscopic behavior is at the heart of many natural and social sciences. This apparent similarity conceals essential differences across disciplines: while physical particles are assumed to optimize the global…

Physics and Society · Physics 2009-12-09 Sébastian Grauwin , Eric Bertin , Rémi Lemoy , Pablo Jensen

Accurate interaction potentials between microscopic components such as colloidal particles or cells are crucial to understanding a range of processes, including colloidal crystallization, bacterial colony formation, and cancer metastasis.…

We calculate the elastic field mediated interaction between macroscopic particles in a columnar hexagonal phase. The interaction is found to be long-ranged and non-central, with both attractive and repulsive parts. We show how the…

Soft Condensed Matter · Physics 2009-11-07 Ronojoy Adhikari

Rydberg atoms and beams of ultracold polar molecules have become highly useful experimental tools in recent years. There is therefore a need for accessible calculations of interaction potentials between such particles and nearby surfaces…

Quantum Physics · Physics 2012-03-05 Simen Å. Ellingsen , Stefan Yoshi Buhmann , Stefan Scheel

Micromotors pushed by biological entities, like motile bacteria, constitute a fascinating way to convert chemical energy into mechanical work at the micrometer scale. Here we show, by using numerical simulations, that a properly designed…

Soft Condensed Matter · Physics 2009-11-13 Luca Angelani , Roberto Di Leonardo , Giancarlo Ruocco

We analyze here the minimal conditions for directional motion (net flow in phase space) of a molecular motor placed on a mirror-symmetric environment and driven by a center-symmetric and time-periodic force field. The complete…

Soft Condensed Matter · Physics 2009-10-31 S. Cilla , F . Falo , L. M. Floria

Recent developments in nanoscale experimental techniques made it possible to utilize single molecule junctions as devices for electronics and energy transfer with quantum coherence playing an important role in their thermoelectric…

Mesoscale and Nanoscale Physics · Physics 2018-03-12 Feng Chen , Yi Gao , Michael Galperin

The Casimir interaction between one-dimensional metallic objects (cylinders, wires) displays unconventional features. Here we study the orientation dependence of this interaction by computing the Casimir energy between two inclined…

Quantum Physics · Physics 2014-10-30 P. Rodriguez-Lopez , T. Emig

The characterization and control of quantum effects in the performance of thermodynamic tasks may open new avenues for small thermal machines working in the nanoscale. We study the impact of coherence in the energy basis in the operation of…

Quantum Physics · Physics 2021-04-14 Kenza Hammam , Yassine Hassouni , Rosario Fazio , Gonzalo Manzano

This paper deals with the complex problem of how to simulate multiparticle contacts. The collision process is responsible for the transfer and dissipation of energy in granular media. A novel model of the interaction force between particles…

Computational Physics · Physics 2007-05-23 Leszczynski Jacek

We have extended our recent molecular-dynamic simulations of memristors to include the effect of thermal inhomogeneities on mobile ionic species appearing during operation of the device. Simulations show a competition between an attractive…

Mesoscale and Nanoscale Physics · Physics 2015-05-20 S. E. Savel'ev , A. S. Alexandrov , A. M. Bratkovsky , R. Stanley Williams

A simple model of the two-state ratchet type is proposed for molecular chemical engines that convert chemical free energy into mechanical work and vice versa. The engine works by catalyzing a chemical reaction and turning a rotor.…

Statistical Mechanics · Physics 2018-05-22 Kazuo Sasaki , Ryo Kanada , Satoshi Amari

Recently, multilevel collectively coupled quantum machines like heat engines and refrigerators have been shown to admit performance enhancements in analogy to superradiance. Thus far, investigations of the performance of collective quantum…

Quantum Physics · Physics 2024-08-19 Julia Boeyens , Benjamin Yadin , Stefan Nimmrichter

Synchronization of activity among myocytes constituting vital organs, e.g., the heart, is crucial for physiological functions. Self-organized coordination in such heterogeneous ensemble of excitable and oscillatory cells is therefore of…

Tissues and Organs · Quantitative Biology 2024-08-21 Soling Zimik , Sitabhra Sinha

The interaction between the quantum vacuum and time-dependent boundaries can produce particles via the dynamical Casimir effect. It is known that, for asymmetric Casimir systems, there is an imbalance in the particle production on either…

Quantum Physics · Physics 2023-10-04 Matthew J. Gorban , William D. Julius , Ramesh Radhakrishnan , Gerald B. Cleaver