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The characterisation of neuronal connectivity is one of the most important matters in neuroscience. In this work, we show that a recently proposed informational quantity, the causal mutual information, employed with an appropriate…

Neurons and Cognition · Quantitative Biology 2018-02-14 F. S. Borges , E. L. Lameu , K. C. Iarosz , P. R. Protachevicz , I. L. Caldas , R. L. Viana , E. E. N. Macau , A. M. Batista , M. S. Baptista

Accurately determining dependency structure is critical to discovering a system's causal organization. We recently showed that the transfer entropy fails in a key aspect of this---measuring information flow---due to its conflation of dyadic…

Information Theory · Computer Science 2017-11-22 Ryan G. James , James P. Crutchfield

Despite the enormous success of graph neural networks (GNNs), most existing GNNs can only be applicable to undirected graphs where relationships among connected nodes are two-way symmetric (i.e., information can be passed back and forth).…

Machine Learning · Computer Science 2021-10-15 Zhuo Tan , Bin Liu , Guosheng Yin

Many methods for causal inference generate directed acyclic graphs (DAGs) that formalize causal relations between $n$ variables. Given the joint distribution on all these variables, the DAG contains all information about how intervening on…

Statistics Theory · Mathematics 2014-01-29 Dominik Janzing , David Balduzzi , Moritz Grosse-Wentrup , Bernhard Schölkopf

Multivariate time series (MTS) forecasting is an essential problem in many fields. Accurate forecasting results can effectively help decision-making. To date, many MTS forecasting methods have been proposed and widely applied. However,…

Machine Learning · Computer Science 2021-12-16 Ziheng Duan , Haoyan Xu , Yida Huang , Jie Feng , Yueyang Wang

Information flow provides a natural measure for the causal interaction between dynamical events. This study extends our previous rigorous formalism of componentwise information flow to the bulk information flow between two complex…

Neurons and Cognition · Quantitative Biology 2021-12-30 X. San Liang

We consider the incorporation of causal knowledge about the presence or absence of (possibly indirect) causal relations into a causal model. Such causal relations correspond to directed paths in a causal model. This type of knowledge…

Artificial Intelligence · Computer Science 2012-07-03 Giorgos Borboudakis , Ioannis Tsamardinos

Network data often take the form of repeated interactions between senders and receivers tabulated over time. A primary question to ask of such data is which traits and behaviors are predictive of interaction. To answer this question, a…

Methodology · Statistics 2013-04-09 Patrick O. Perry , Patrick J. Wolfe

Network inference, the task of reconstructing interactions in a complex system from experimental observables, is a central yet extremely challenging problem in systems biology. While much progress has been made in the last two decades,…

Quantitative Methods · Quantitative Biology 2024-09-12 Stephen Y Zhang

Many processes of spreading and diffusion take place on temporal networks, and their outcomes are influenced by correlations in the times of contact. These correlations have a particularly strong influence on processes where the spreading…

Physics and Society · Physics 2017-09-19 Mikko Kivelä , Jordan Cambe , Jari Saramäki , Márton Karsai

Stochastic network influences complicate graph filter design by producing uncertainty in network iteration matrix eigenvalues, the points at which the graph filter response is defined. While joint statistics for the eigenvalues typically…

Signal Processing · Electrical Eng. & Systems 2018-03-01 Stephen Kruzick , José M. F. Moura

Information Theory concepts and methodologies conform the background of how communication systems are studied and understood. They are mainly focused on the source-channel-receiver problem and on the asymptotic limits of accuracy and…

Adaptation and Self-Organizing Systems · Physics 2017-05-16 Nicolás Rubido , Celso Grebogi , Murilo S. Baptista

At present, multi-electrode array (MEA) approach and optical recording allow us to acquire plant electrical activity with higher spatio-temporal resolution. To understand the dynamic information flow of the electrical signaling system and…

Neurons and Cognition · Quantitative Biology 2017-04-03 Yang Chen , Dong-Jie Zhao , Chao Song , Wei-He Liu , Zi-Yang Wang , Zhong-Yi Wang , Guiliang Tang , Lan Huang

Counterfactual learning has become promising for understanding and modeling causality in complex and dynamic systems. This paper presents a novel method for counterfactual learning in the context of multivariate time series analysis and…

Machine Learning · Computer Science 2026-03-03 Gianlucca Zuin , Adriano Veloso

Provenance, or information about the sources, derivation, custody or history of data, has been studied recently in a number of contexts, including databases, scientific workflows and the Semantic Web. Many provenance mechanisms have been…

Logic in Computer Science · Computer Science 2010-06-09 James Cheney

Provenance, or information about the sources, derivation, custody or history of data, has been studied recently in a number of contexts, including databases, scientific workflows and the Semantic Web. Many provenance mechanisms have been…

Programming Languages · Computer Science 2010-04-20 James Cheney

We show how important phenomena in social networks like coordination, trust and the communication of unsubstantiated information (gossip) can be modelled and understood using epistemic networks or epinets: directed graphs comprising…

Social and Information Networks · Computer Science 2021-02-25 Mihnea C. Moldoveanu , Joel A. C. Baum

The connectivity of a network contains information about the relationships between nodes, which can denote interactions, associations, or dependencies. We show that this information can be analyzed by measuring the uncertainty (and…

Physics and Society · Physics 2020-01-23 Brennan Klein , Erik Hoel

We propose a new measure to estimate the direction of information flux in multivariate time series from complex systems. This measure, based on the slope of the phase spectrum (Phase Slope Index) has invariance properties that are important…

While for standard percolation directionality is known to increase the combinatorial complexity of percolation, here we show that when connectivity is ensured by paths of length $R\geq 2$, network directionality, impeding backtracking, can…

Disordered Systems and Neural Networks · Physics 2026-05-26 Wenbo Liu , Yiwen Zeng , Xueming Liu , Ginestra Bianconi