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Psychological network approaches propose to see symptoms or questionnaire items as interconnected nodes, with links between them reflecting pairwise statistical dependencies evaluated cross-sectional, time-series, or panel data. These…

Artificial intelligence models and methods commonly lack causal interpretability. Despite the advancements in interpretable machine learning (IML) methods, they frequently assign importance to features which lack causal influence on the…

Machine Learning · Computer Science 2024-01-29 Francisco Nunes Ferreira Quialheiro Simoes , Mehdi Dastani , Thijs van Ommen

In this article, we discuss the problem of establishing relations between information measures assessed for network structures. Two types of entropy based measures namely, the Shannon entropy and its generalization, the R\'{e}nyi entropy…

Information Theory · Computer Science 2013-01-24 Lavanya Sivakumar , Matthias Dehmer

The causal connectivity of a network is often inferred to understand the network function. It is arguably acknowledged that the inferred causal connectivity relies on causality measure one applies, and it may differ from the network's…

Neurons and Cognition · Quantitative Biology 2021-10-20 Zhong-qi K. Tian , Kai Chen , Songting Li , David W. McLaughlin , Douglas Zhou

Directed information or its variants are utilized extensively in the characterization of the capacity of channels with memory and feedback, nonanticipative lossy data compression, and their generalizations to networks. In this paper, we…

Information Theory · Computer Science 2015-12-24 Charalambos D. Charalambous , Photios A. Stavrou

Transfer entropy provides a general tool for analyzing the magnitudes and directions---but not the \emph{kinds}---of information transfer in a system. We extend transfer entropy in two complementary ways. First, we distinguish…

Data Analysis, Statistics and Probability · Physics 2011-02-09 Paul L. Williams , Randall D. Beer

In this paper, we propose a new Granger causality measure which is robust against the confounding influence of latent common inputs. This measure is inspired by partial Granger causality in the literature, and its variant. Using numerical…

Methodology · Statistics 2019-08-13 Takashi Arai

Imagery is frequently used to model, represent and communicate knowledge. In particular, graphs are one of the most powerful tools, being able to represent relations between objects. Causal relations are frequently represented by directed…

Artificial Intelligence · Computer Science 2020-11-25 Alejandro Sobrino , Eduardo C. Garrido-Merchan , Cristina Puente

To provide adequate multivariate measures of information flow between neural structures, modified expressions of Partial Directed Coherence (PDC) and Directed Transfer Function (DTF), two popular multivariate connectivity measures employed…

Statistics Theory · Mathematics 2010-12-03 Daniel Yasumasa Takahashi , Luiz Antonio Baccalá , Koichi Sameshima

When a dynamical system can be modeled as a sequence of observations, Granger causality is a powerful approach for detecting predictive interactions between its variables. However, traditional Granger causal inference has limited utility in…

Machine Learning · Computer Science 2022-10-20 Rohit Singh , Alexander P. Wu , Bonnie Berger

What does the informational complexity of dynamical networked systems tell us about intrinsic mechanisms and functions of these complex systems? Recent complexity measures such as integrated information have sought to operationalize this…

Neural and Evolutionary Computing · Computer Science 2017-07-06 Xerxes D. Arsiwalla , Pedro A. M. Mediano , Paul F. M. J. Verschure

Inferring the directionality of interactions between cellular processes is a major challenge in systems biology. Time-lagged correlations allow to discriminate between alternative models, but they still rely on assumed underlying…

Quantitative Methods · Quantitative Biology 2017-11-15 Sourabh Lahiri , Philippe Nghe , Sander J. Tans , Martin Luc Rosinberg , David Lacoste

Directed graphs are a natural model for many phenomena, in particular scientific knowledge graphs such as molecular interaction or chemical reaction networks that define cellular signaling relationships. In these situations, source nodes…

Many applications collect a large number of time series, for example, the financial data of companies quoted in a stock exchange, the health care data of all patients that visit the emergency room of a hospital, or the temperature sequences…

Information Theory · Computer Science 2017-02-09 Jonathan Mei , José M. F. Moura

Using network-based information to facilitate information spreading is an essential task for spreading dynamics in complex networks, which will benefit the promotion of technical innovations, healthy behaviors, new products, etc. Focusing…

Physics and Society · Physics 2016-06-20 Lei Gao , Wei Wang , Liming Pan , Ming Tang , Hai-Feng Zhang

Granger causality has become an indispensable tool for analyzing causal relationships between time series. In this paper, we provide a detailed overview of its mathematical foundations, trace its historical development, and explore how…

Complex Variables · Mathematics 2024-12-30 Lasha Ephremidze

Extracting the interaction rules of biological agents from movement sequences pose challenges in various domains. Granger causality is a practical framework for analyzing the interactions from observed time-series data; however, this…

Connectivity and reachability on temporal networks, which can describe the spreading of a disease, decimation of information or the accessibility of a public transport system over time, have been among the main contemporary areas of study…

Physics and Society · Physics 2023-06-13 Arash Badie-Modiri , Abbas K. Rizi , Márton Karsai , Mikko Kivelä

Studies investigating neural information processing often implicitly ask both, which processing strategy out of several alternatives is used and how this strategy is implemented in neural dynamics. A prime example are studies on predictive…

Temporal graphs represent the dynamic relationships among entities and occur in many real life application like social networks, e commerce, communication, road networks, biological systems, and many more. They necessitate research beyond…

Machine Learning · Computer Science 2022-08-26 Shubham Gupta , Srikanta Bedathur
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