Related papers: Loops in canonical RNA pseudoknot structures
Distribution functions in hard processes can be described by quark-quark correlators, nonlocal matrix elements of quark fields. Color gauge invariance requires inclusion of appropriate gauge links in these correlators. For transverse…
We present a systematic analysis of quantum Heisenberg-, XY- and interchange models on the complete graph. These models exhibit phase transitions accompanied by spontaneous symmetry breaking, which we study by calculating the generating…
The NA48/2 collaboration has shown clear experimental evidence for a cusp in the data for K -> pi pi^0 pi^0. This effect can be used to extract information on the pi-pi scattering lengths. We address this issue using a two-loop dispersive…
Isospin breaking in the Kl4 form factors induced by the difference between charged and neutral pion masses is studied. Starting from suitably subtracted dispersion representations, the form factors are constructed in an iterative way up to…
Non-coding RNA sequences play a great role in controlling a number of cellular functions, thus raising the need to understand their complex conformational dynamics in quantitative detail. In this perspective, we first show that single…
We study the risk of minimum-norm interpolants of data in Reproducing Kernel Hilbert Spaces. Our upper bounds on the risk are of a multiple-descent shape for the various scalings of $d = n^{\alpha}$, $\alpha\in(0,1)$, for the input…
We present the three-loop remainder function, which describes the scattering of six gluons in the maximally-helicity-violating configuration in planar N=4 super-Yang-Mills theory, as a function of the three dual conformal cross ratios. The…
The contact map of a protein fold is a graph that represents the patterns of contacts in the fold. It is known that the contact map can be decomposed into stacks and queues. RNA secondary structures are special stacks in which the degree of…
We count the number of histories between the two degenerate minimum energy configurations of the Ising model on a chain, as a function of the length n and the number d of kinks that appear above the critical temperature. This is equivalent…
We consider random permutations on $\Sn$ with logarithmic growing cycles weights and study asymptotic behavior as the length $n$ tends to infinity. We show that the cycle count process converges to a vector of independent Poisson variables…
We describe random loop models and their relations to a family of quantum spin systems on finite graphs. The family includes spin 1/2 Heisenberg models with possibly anisotropic spin interactions and certain spin 1 models with…
We prove that the asymptotic distribution of resonances has a multilevel internal structure for the following classes of Hamiltonians H: Schr\"odinger operators with point interactions in $\mathbb{R}^3$, quantum graphs, and 1-D photonic…
MicroRNAs are endogenous non-coding RNAs which negatively regulate the expression of protein-coding genes in plants and animals. They are known to play an important role in several biological processes and, together with transcription…
Accurate RNA structure modeling remains difficult because RNA backbones are highly flexible, non-canonical interactions are prevalent, and experimentally determined 3D structures are comparatively scarce. We introduce \emph{RiboSphere}, a…
In this paper we found the multiplicity distribution of the produced gluons in deep inelastic scattering at large $z=\ln\LbQ^2_s/Q^2\Rb\,\,\gg\,\,1$ where $ Q_s $ is the saturation momentum and $Q^2$ is the photon virtuality. It turns out…
An elementary, at the undergraduate level derivation is given of precise upper bounds of the number of various RNA secondary structures. The method works when the generating function has multiple singularities at the circle of convergence,…
Nonlocal cross-diffusion systems on the torus, arising in population dynamics and neuroscience, are analyzed. The global existence of weak solutions, the weak-strong uniqueness, and the localization limit are proved. The kernels are assumed…
Recently several minimum free energy (MFE) folding algorithms for predicting the joint structure of two interacting RNA molecules have been proposed. Their folding targets are interaction structures, that can be represented as diagrams with…
Secondary structure formation of nucleic acids strongly depends on salt concentration and temperature. We develop a theory for RNA folding that correctly accounts for sequence effects, the entropic contributions associated with loop…
A veritable zoo of different knots is seen in the ensemble of looped polymer chains, whether created computationally or observed in vitro. At short loop lengths, the spectrum of knots is dominated by the trivial knot (unknot). The…