Related papers: Loops in canonical RNA pseudoknot structures
We consider the one-loop factorization of the simplest twist-three process: inclusive deep-inelastic scattering of longitudinally-polarized leptons on a transversely-polarized nucleon target. By studying the Compton amplitudes for certain…
Isospin breaking in the $K_{\ell 4}$ form factors induced by the difference between charged and neutral pion masses is discussed within a framework built on suitably subtracted dispersion representations. The $K_{\ell 4}$ form factors are…
Combinatorial analysis of a certain abstract of RNA structures has been studied to investigate their statistics. Our approach regards the backbone of secondary structures as an alternate sequence of paired and unpaired sets of nucleotides,…
An RNA sequence is a word over an alphabet on four elements $\{A,C,G,U\}$ called bases. RNA sequences fold into secondary structures where some bases match one another while others remain unpaired. Pseudoknot-free secondary structures can…
We consider multi-class systems of interacting nonlinear Hawkes processes modeling several large families of neurons and study their mean field limits. As the total number of neurons goes to infinity we prove that the evolution within each…
The paper provides bounds for the ropelength of a link in terms of the crossing numbers of its split components. As in earlier papers, the bounds grow with the square of the crossing number; however, the constant involved is a substantial…
We construct the limiting mixed Hodge structure of a degeneration of compact K\"ahler manifolds over the unit disk with a possibly non-reduced simple normal crossing singular central fiber via holonomic $\mathscr D$-modules, generalizing…
Pion-loop corrections for Compton scattering are calculated in a novel approach based on the use of dispersion relations in a formalism obeying unitarity. The basic framework is presented, including an application to Compton scattering. In…
$k$-core percolation is a percolation model which gives a notion of network functionality and has many applications in network science. In analysing the resilience of a network under random damage, an extension of this model is introduced,…
Percolation processes on random networks have been the subject of intense research activity over the last decades: the overall phenomenology of standard percolation on uncorrelated and unclustered topologies is well known. Still some…
Formation of a pseudoknot in the conserved RNA core domain in the ribonucleoprotein human telomerase is required for function. In vitro experiments show that the pseudoknot (PK) is in equilibrium with an extended hairpin (HP) structure. We…
Background: RNA exhibits a variety of structural configurations. Here we consider a structure to be tantamount to the noncrossing Watson-Crick and \pairGU-base pairings (secondary structure) and additional cross-serial base pairs. These…
We discuss bounds on the distribution and fragmentation functions that appear at leading order in deep inelastic 1-particle inclusive leptoproduction or in Drell-Yan processes. These bounds simply follow from positivity of the quark-hadron…
We have the generating function which determines the number of $2$-bridge knot groups admitting epimorphisms onto the knot group of a given $2$-bridge knot, in terms of crossing number. In this paper, we will refine this formula by taking…
We generalize the notion of linear chord diagrams to the case of matched sets of size $k$, which we call $k$-chord diagrams. We provide formal generating functions and recurrence relations enumerating these $k$-chord diagrams by the number…
We study numerically the behavior of RNA secondary structures under influence of a varying external force. This allows to measure the work $W$ during the resulting fast unfolding and refolding processes. Here, we investigate a medium-size…
The causal representation of multi-loop scattering amplitudes, obtained from the application of the loop-tree duality formalism, comprehensively elucidates, at integrand level, the behaviour of only physical singularities. This…
We generate inherent structures, local potential-energy minima, of the "$k$-space overlap potential" in two-dimensional many-particle systems using a cooling and quenching simulation technique. The ground states associated with the…
We study the thickness of the confining flux tube generated by a pair of sources in higher representations of the gauge group. Using a simple geometric picture we argue that the area of the cross-section of the flux tube, as measured by a…
Advanced Monte Carlo simulations are used to study the effect of nano-slit confinement on metric and topological properties of model DNA chains. We consider both linear and circularised chains with contour lengths in the 1.2--4.8 $\mu$m…