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We investigate quantum information processing and manipulations in disordered systems of ultracold atoms and trapped ions. First, we demonstrate generation of entanglement and local realization of quantum gates in a quantum spin glass…
We introduce the method of using an annealing genetic algorithm to the numerically complex problem of looking for quantum logic gates which simultaneously have highest fidelity and highest success probability. We first use the linear…
While several paths have emerged in microelectronics and computing as follow-ons to Turing architectures, and have been implemented using essentially silicon circuits, very little beyond Moore research has considered: (1) first biological…
Living systems process sensory data to facilitate adaptive behaviour. A given sensor can be stimulated as the result of internally driven activity, or by purely external (environmental) sources. It is clear that these inputs are processed…
The connection between optimal biological function and energy use, measured for example by the rate of metabolite consumption, is a current topic of interest in the systems biology literature which has been explored in several different…
We present the Thought Graph as a novel framework to support complex reasoning and use gene set analysis as an example to uncover semantic relationships between biological processes. Our framework stands out for its ability to provide a…
Exploiting the information provided by the molecular noise of a biological process has proven to be valuable in extracting knowledge about the underlying kinetic parameters and sources of variability from single cell measurements. However,…
The significant role of epigenetic mechanisms within natural systems has become increasingly clear. This paper uses a recently presented abstract, tunable Boolean genetic regulatory network model to explore aspects of epigenetics. It is…
Bayesian optimization has become widely popular across various experimental sciences due to its favorable attributes: it can handle noisy data, perform well with relatively small datasets, and provide adaptive suggestions for sequential…
Traditional databases commonly support efficient query and update procedures that operate in time which is sublinear in the size of the database. Our goal in this paper is to take a first step toward dynamic reasoning in probabilistic…
Recently it was realized that linear optics and photo-detectors with feedback can be used for theoretically efficient quantum information processing. The first of three steps toward efficient linear optics quantum computation (eLOQC) was to…
Despite evidence for the existence of engrams as memory support structures in our brains, there is no consensus framework in neuroscience as to what their physical implementation might be. Here we propose how we might design a computer…
Self-sustaining nonlinear oscillators of practically any type can function as latches and registers if Boolean logic states are represented physically as the phase of oscillatory signals. Combinational operations on such phase-encoded logic…
Quantum logic gates provide fundamental examples of conditional quantum dynamics. They could form the building blocks of general quantum information processing systems which have recently been shown to have many interesting non--classical…
Quantum logic operations between physically distinct qubits is an essential aspect of large-scale quantum information processing. We propose an approach to high-speed mixed-species entangling operations in trapped-ion quantum computers,…
Human decisional processes result from the employment of selected quantities of relevant information, generally synthesized from environmental incoming data and stored memories. Their main goal is the production of an appropriate and…
Stochastic models of biochemical reaction networks are widely used to capture intrinsic noise in cellular systems. The typical formulation of these models are based on Markov processes for which there is extensive research on efficient…
Biotechnology offers many opportunities for the sustainable manufacturing of valuable products. The toolbox to optimize bioprocesses includes \textit{extracellular} process elements such as the bioreactor design and mode of operation,…
We present a novel scheme for data processing which is well-suited for implementation at the nanometer scale. The logic circuits comprise two-state cellular units which are driven by externally applied updates, in contrast to earlier…
The latest results of benchmarking research are presented for a variety of beyond-CMOS charge- and spin-based devices. In addition to improving the device-level models, several new device proposals and a few majorly modified devices are…