Related papers: Reconstruction on Trees: Exponential Moment Bounds…
We study the mixing time of the single-site update Markov chain, known as the Glauber dynamics, for generating a random independent set of a tree. Our focus is obtaining optimal convergence results for arbitrary trees. We consider the more…
In this paper, we consider the problem of reconstructing trees from traces in the tree edit distance model. Previous work by Davies et al. (2019) analyzed special cases of reconstructing labeled trees. In this work, we significantly expand…
In phylogenetic studies, biologists often wish to estimate the ancestral discrete character state at an interior vertex $v$ of an evolutionary tree $T$ from the states that are observed at the leaves of the tree. A simple and fast…
Let $\mathbb{T}$ denote a rooted $b$-ary tree and let $\{S_v\}_{v\in \mathbb{T}}$ denote a branching random walk indexed by the vertices of the tree, where the increments are i.i.d. and possess a logarithmic moment generating function…
We study supercritical branching processes in which all particles evolve according to some general Markovian motion (which may possess absorbing states) and branch independently at a fixed constant rate. Under fairly natural assumptions on…
We solved the Frenkel-Kontorova model with the potential $V(u)= -\frac{1}{2} |\lambda|(u-{\rm Int}[u]-\frac{1}{2})^2$ exactly. For given $|\lambda|$, there exists a positive integer $q_c$ such that for almost all values of the tensile force…
In this work we consider the Metric Steiner Forest problem in the sublinear time model. Given a set $V$ of $n$ points in a metric space where distances are provided by means of query access to an $n\times n$ distance matrix, along with a…
This paper studies the entropy of tree-shifts of finite type with and without boundary conditions. We demonstrate that computing the entropy of a tree-shift of finite type is equivalent to solving a system of nonlinear recurrence equations.…
The Kesten-Stigum Theorem is a fundamental criterion for the rate of growth of a supercritical branching process, showing that an L log L condition is decisive. In critical and subcritical cases, results of Kolmogorov and later authors give…
Let $\hat m_{ij}$ be the hitting (mean first passage) time from state $i$ to state $j$ in an $n$-state ergodic homogeneous Markov chain with transition matrix $T$. Let $\Gamma$ be the weighted digraph whose vertex set coincides with the set…
We derive tractable criteria for the consistency of Bayesian tree reconstruction procedures, which constitute a central class of algorithms for inferring common ancestry among DNA sequence samples in phylogenetics. Our results encompass…
Linguistic structures exhibit a rich array of global phenomena, however commonly used Markov models are unable to adequately describe these phenomena due to their strong locality assumptions. We propose a novel hierarchical model for…
Markov chain Monte Carlo (MCMC) is a commonly used method for approximating expectations with respect to probability distributions. Uncertainty assessment for MCMC estimators is essential in practical applications. Moreover, for…
We consider Gibbs distributions on finite random plane trees with bounded branching. We show that as the order of the tree grows to infinity, the distribution of any finite neighborhood of the root of the tree converges to a limit. We…
We introduce a framework for obtaining tight mixing times for Markov chains based on what we call restricted modified log-Sobolev inequalities. Modified log-Sobolev inequalities (MLSI) quantify the rate of relative entropy contraction for…
Inspired by biological dynamics, we consider a growth Markov process taking values on the space of rooted binary trees, similar to the Aldous-Shields model. Fix $n\ge 1$ and $\beta>0$. We start at time 0 with the tree composed of a root…
We prove that the local limit of the weighted spanning trees on any simple connected high degree almost regular sequence of electric networks is the Poisson(1) branching process conditioned to survive forever, by generalizing [NP22] and…
The critical beta-splitting tree, introduced by Aldous, is a Markov branching phylogenetic tree. Aldous and Pittel recently proved, amongst other results, a central limit theorem for the height of a random leaf. We give an alternative…
Resurgent transseries have recently been shown to be a very powerful construction in order to completely describe nonperturbative phenomena in both matrix models and topological or minimal strings. These solutions encode the full…
In the classical Steiner tree problem, given an undirected, connected graph $G=(V,E)$ with non-negative edge costs and a set of \emph{terminals} $T\subseteq V$, the objective is to find a minimum-cost tree $E' \subseteq E$ that spans the…