Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony
Abstract
In phylogenetic studies, biologists often wish to estimate the ancestral discrete character state at an interior vertex of an evolutionary tree from the states that are observed at the leaves of the tree. A simple and fast estimation method --- maximum parsimony --- takes the ancestral state at to be any state that minimises the number of state changes in required to explain its evolution on . In this paper, we investigate the reconstruction accuracy of this estimation method further, under a simple symmetric model of state change, and obtain a number of new results, both for 2-state characters, and --state characters (). Our results rely on establishing new identities and inequalities, based on a coupling argument that involves a simpler `coin toss' approach to ancestral state reconstruction.
Keywords
Cite
@article{arxiv.1805.00548,
title = {Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony},
author = {Lina Herbst and Thomas Li and Mike Steel},
journal= {arXiv preprint arXiv:1805.00548},
year = {2018}
}
Comments
26 pages, 4 figures