Related papers: On Bijective Variants of the Burrows-Wheeler Trans…
Theorems relating permutations with objects in other fields of mathematics are often stated in terms of avoided patterns. Examples include various classes of Schubert varieties from algebraic geometry (Billey and Abe 2013), commuting…
We study the impact that string reversal can have on several repetitiveness measures. First, we exhibit an infinite family of strings where the number, $r$, of runs in the run-length encoding of the Burrows--Wheeler transform (BWT) can…
In the combinatorial study of the coefficients of a bivariate polynomial that generalizes both the length and the reflection length generating functions for finite Coxeter groups, Petersen introduced a new Mahonian statistic $sor$, called…
In 2000, Babson and Steingr\'{i}msson generalized the notion of permutation patterns to the so-called vincular patterns, and they showed that many Mahonian statistics can be expressed as sums of vincular pattern occurrence statistics. STAT…
Let $s$ be West's stack-sorting map, and let $s_{T}$ be the generalized stack-sorting map, where instead of being required to increase, the stack avoids subpermutations that are order-isomorphic to any permutation in the set $T$. In 2020,…
Indexing highly repetitive strings (i.e., strings with many repetitions) for fast queries has become a central research topic in string processing, because it has a wide variety of applications in bioinformatics and natural language…
We describe a new method for finding patterns in permutations that produce a given pattern after the permutation has been passed once through a stack. We use this method to describe West-3-stack-sortable permutations, that is, permutations…
Vision Transformers (ViTs) and Swin Transformers (Swin) are currently state-of-the-art in computational pathology. However, domain experts are still reluctant to use these models due to their lack of interpretability. This is not…
The binomial notation (w u) represents the number of occurrences of the word u as a (scattered) subword in w. We first introduce and study possible uses of a geometrical interpretation of (w ab) and (w ba) when a and b are distinct letters.…
Set Shaping Theory (SST) moves beyond the classical fixed-space model by constructing bijective mappings the original sequence set into structured regions of a larger sequence space. These shaped subsets are characterized by a reduced…
In Transformer-based neural machine translation (NMT), the positional encoding mechanism helps the self-attention networks to learn the source representation with order dependency, which makes the Transformer-based NMT achieve…
The compression of highly repetitive strings (i.e., strings with many repetitions) has been a central research topic in string processing, and quite a few compression methods for these strings have been proposed thus far. Among them, an…
We study a sorting procedure (run-sorting) on permutations, where runs are rearranged in lexicographic order. We describe a rather surprising bijection on permutations on length $n$, with the property that it sends the set of peak-values to…
Define a permutation to be any sequence of distinct positive integers. Given two permutations p and s on disjoint underlying sets, we denote by p sh s the set of shuffles of p and s (the set of all permutations obtained by interleaving the…
The Euler number $E_n$ (resp. Entringer number $E_{n,k}$) enumerates the alternating (down-up) permutations of $\{1,\dots,n\}$ (resp. starting with $k$). The Springer number $S_n$ (resp. Arnold number $S_{n,k}$) enumerates the type $B$…
This paper presents bsort, a non-comparison-based sorting algorithm for signed and unsigned integers, and floating-point values. The algorithm unifies these cases through an approach derived from binary quicksort, achieving $O(wn)$ runtime…
We consider a stack sorting algorithm where only the appropriate output values are popped from the stack and then any remaining entries in the stack are run through the stack in reverse order. We identify the basis for the $2$-reverse pass…
Modern genomic analyses increasingly rely on pangenomes, that is, representations of the genome of entire populations. The simplest representation of a pangenome is a set of individual genome sequences. Compared to e.g. sequence graphs,…
We present a simple bijection between permutation matrices and descending plane partitions without special parts. This bijection is already mentioned in work of P. Lalonde (without giving the details); it involves the inversion words of…
Super-strong Wilf equivalence classes of the symmetric group ${\mathcal S}_n$ on $n$ letters, with respect to the generalized factor order, were shown by Hadjiloucas, Michos and Savvidou (2018) to be in bijection with pyramidal sequences of…