Related papers: An improved bound on the Maximum Agreement Subtree…

We consider the polyhedral properties of two spanning tree problems with additional constraints. In the first problem, it is required to find a tree with a minimum sum of edge weights among all spanning trees with the number of leaves less…

An independent edge set of graph $G$ is a matching, and is maximal if it is not a proper subset of any other matching of $G$. The number of all the maximal matchings of $G$ is denoted by $\Psi(G)$. In this paper, an algorithm to count…

We derive tight bounds on the expected weights of several combinatorial optimization problems for random point sets of size $n$ distributed among the leaves of a balanced hierarchically separated tree. We consider {\it monochromatic} and…

In this paper and a companion paper, we prove that, if $m$ is sufficiently large, every graph on $m+1$ vertices that has a universal vertex and minimum degree at least $\lfloor \frac{2m}{3} \rfloor$ contains each tree $T$ with $m$ edges as…

Extremal graph theory studies the maximum or minimum number of subgraphs isomorphic to a prescribed graph under given constraints. \textit{Localization} has recently emerged as a framework that refines such problems by assigning extremal…

We look at tree amalgamations of locally finite quasi-transitive hyperbolic graphs and prove that the homeomorphism type of the hyperbolic boundary of such a tree amalgamation only depends on the homeomorphism types of the hyperbolic…

We give a short and direct proof of a remarkable identity that arises in the enumeration of labeled trees with respect to their indegree sequence, where all edges are oriented from the vertex with lower label towards the vertex with higher…

For an undirected tree with $n$ edges labelled by single letters, we consider its substrings, which are labels of the simple paths between pairs of nodes. We prove that there are $O(n^{1.5})$ different palindromic substrings. This solves an…

It is a known fact that, given two rooted binary phylogenetic trees, the concept of maximum acyclic agreement forests is sufficient to compute hybridization networks with minimum hybridization number. In this work, we demonstrate by first…

A connected graph, on four or more vertices, is matching covered (aka 1-extendable) if every edge is present in some perfect matching. An ear decomposition theorem exists for bipartite matching covered graphs due to Hetyei. From the results…

Best match graphs (BMGs) are vertex-colored digraphs that naturally arise in mathematical phylogenetics to formalize the notion of evolutionary closest genes w.r.t. an a priori unknown phylogenetic tree. BMGs are explained by unique least…

Given two messages - as linear sequences of letters, it is immediate to determine whether one can be transformed into the other by simple substitution cipher of the letters. On the other hand, if the letters are carried as labels on nodes…

We prove that every connected graph with $s$ vertices of degree~1 and 3 and $t$ vertices of degree at least~4 has a spanning tree with at least ${1\over 3}t +{1\over 4}s+{3\over 2}$ leaves. We present infinite series of graphs showing that…

Three standard subtree transfer operations for binary trees, used in particular for phylogenetic trees, are: tree bisection and reconnection ($TBR$), subtree prune and regraft ($SPR$) and rooted subtree prune and regraft ($rSPR$). For a…

Let $P$ and $S$ be two disjoint sets of $n$ and $m$ points in the plane, respectively. We consider the problem of computing a Steiner tree whose Steiner vertices belong to $S$, in which each point of $P$ is a leaf, and whose longest edge…

We consider the problem of minimising the number of states in a multiplicity tree automaton over the field of rational numbers. We give a minimisation algorithm that runs in polynomial time assuming unit-cost arithmetic. We also show that a…

We consider the satisfiability problem for the two-variable fragment of the first-order logic extended with modulo counting quantifiers and interpreted over finite words or trees. We prove a small-model property of this logic, which gives a…

The input to the agreement problem is a collection $P = \{T_1, T_2, \dots , T_k\}$ of phylogenetic trees, called input trees, over partially overlapping sets of taxa. The question is whether there exists a tree $T$, called an agreement…

The largest common embeddable subtree problem asks for the largest possible tree embeddable into two input trees and generalizes the classical maximum common subtree problem. Several variants of the problem in labeled and unlabeled rooted…

We improve the previously best known lower and upper bounds on the number n_g of numerical semigroups of genus g. Starting from a known recursive description of the tree T of numerical semigroups, we analyze some of its properties and use…