Related papers: An improved bound on the Maximum Agreement Subtree…
The HOM problem, which asks whether the image of a regular tree language under a given tree homomorphism is again regular, is known to be decidable [Godoy & Gim\'enez: The HOM problem is decidable. JACM 60(4), 2013]. However, the problem…
For each $\Delta>0$, we prove that there exists some $C=C(\Delta)$ for which the binomial random graph $G(n,C\log n/n)$ almost surely contains a copy of every tree with $n$ vertices and maximum degree at most $\Delta$. In doing so, we…
We consider the problem of finding the smallest graph that contains two input trees each with at most $n$ vertices preserving their distances. In other words, we look for an isometric-universal graph with the minimum number of vertices for…
We characterise the bracketing identities satisfied by linear quasigroups with the help of certain equivalence relations on binary trees that are based on the left and right depths of the leaves modulo some integers. The numbers of…
Packing graphs is a combinatorial problem where several given graphs are being mapped into a common host graph such that every edge is used at most once. In the planar tree packing problem we are given two trees T1 and T2 on n vertices and…
The Harmonic Mapping Problem asks when there exists a harmonic homeomorphism between two given domains. It arises in the theory of minimal surfaces and in calculus of variations, specifically in hyperelasticity theory. We investigate this…
We consider the tree consensus problem, an important problem in bioinformatics. Given a rooted tree $t$ and another tree $T$, one would like to incorporate compatible information from $T$ to $t$. This problem is a subproblem in the tree…
Given an $n$-point metric space $(X,d_X)$, a tree cover $\mathcal{T}$ is a set of $|\mathcal{T}|=k$ trees on $X$ such that every pair of vertices in $X$ has a low-distortion path in one of the trees in $\mathcal{T}$. Tree covers have been…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. Here we explore the practical impact of kernelization (i.e. data reduction) on the NP-hard problem of computing the TBR distance between two unrooted binary…
In this paper, we study a number of well-known combinatorial optimization problems that fit in the following paradigm: the input is a collection of (potentially inconsistent) local relationships between the elements of a ground set (e.g.,…
This work considers a number of optimization problems and reductive relations between them. The two main problems we are interested in are the \emph{Optimal Decision Tree} and \emph{Set Cover}. We study these two fundamental tasks under…
In SODA'99, Chan introduced a simple type of planar straight-line upward order-preserving drawings of binary trees, known as LR drawings: such a drawing is obtained by picking a root-to-leaf path, drawing the path as a straight line, and…
We present a complete classification of the deterministic distributed time complexity for a family of graph problems: binary labeling problems in trees. These are locally checkable problems that can be encoded with an alphabet of size two…
We consider the problem of finding a spanning tree with maximum number of leaves (MaxLeaf). A 2-approximation algorithm is known for this problem, and a 3/2-approximation algorithm when restricted to graphs where every vertex has degree 3…
We introduce and investigate the approximability of the maximum binary tree problem (MBT) in directed and undirected graphs. The goal in MBT is to find a maximum-sized binary tree in a given graph. MBT is a natural variant of the…
Submodularity in combinatorial optimization has been a topic of many studies and various algorithmic techniques exploiting submodularity of a studied problem have been proposed. It is therefore natural to ask, in cases where the cost…
Tree-based phylogenetic networks, which may be roughly defined as leaf-labeled networks built by adding arcs only between the original tree edges, have elegant properties for modeling evolutionary histories. We answer an open question of…
In this short note we prove that, given two (not necessarily binary) rooted phylogenetic trees T_1, T_2 on the same set of taxa X, where |X|=n, the hybridization number of T_1 and T_2 can be computed in time O^{*}(2^n) i.e. O(2^{n}…
We investigate the power of randomized algorithms for the maximum cardinality matching (MCM) and the maximum weight matching (MWM) problems in the online preemptive model. In this model, the edges of a graph are revealed one by one and the…
The finite satisfiability problem for the two-variable fragment of first-order logic interpreted over trees was recently shown to be ExpSpace-complete. We consider two extensions of this logic. We show that adding either additional binary…