English
Related papers

Related papers: Identification of Bacteria by Patterns Generated f…

200 papers

One of the key challenges to predict odor from molecular structure is unarguably our limited understanding of the odor space and the complexity of the underlying structure-odor relationships. Here, we show that the predictive performance of…

Quantitative Methods · Quantitative Biology 2025-08-14 Akshay Sajan , Stijn Sluis , Reza Haydarlou , Sanne Abeln , Pasquale Lisena , Raphael Troncy , Caro Verbeek , Inger Leemans , Halima Mouhib

Identifying pathogens in complex samples such as blood, urine, and wastewater is critical to detect infection and inform optimal treatment. Surface-enhanced Raman spectroscopy (SERS) and machine learning (ML) can distinguish among multiple…

A diffusion-reaction model for the growth of bacterial colonies is presented. The often observed cooperative behavior developed by bacteria which increases their motility in adverse growth conditions is here introduced as a nonlinear…

Condensed Matter · Physics 2009-10-31 A. M. Lacasta , I. R. Cantalapiedra , C. E. Auguet , A. Penaranda , L. Ramirez-Piscina

The sense of smell is an important part of living organisms. It assists with the interaction of the living organism with its environment. The mechanism by which smell is detected and identified is not fully known. Earlier, shape theory was…

Biological Physics · Physics 2019-11-07 Chukwuemeka Asogwa

Buchanan et al. [Nature 436, p. 475 (2005)] have shown that it is possible to recognize paper samples via their speckle pattern by using a line-shaped laser focus, four photo detectors and a scanning mechanism. In this report recognition of…

Physics Education · Physics 2007-05-23 F. van Beijnum , E. G. van Putten , K. L. van der Molen , A. P. Mosk

This paper is devoted to change-point detection using only the ordinal structure of a time series. A statistic based on the conditional entropy of ordinal patterns characterizing the local up and down in a time series is introduced and…

Statistics Theory · Mathematics 2017-07-18 Anton M. Unakafov , Karsten Keller

How systems are endowed with migration capacity is a fascinating question with implications ranging from the design of novel active systems to the control of microbial populations. Bacteria, which can be found in a variety of environments,…

Biological Physics · Physics 2017-07-03 Marc Hennes , Julien Tailleur , Gaëlle Charron , Adrian Daerr

The worldwide increase of antimicrobial resistance (AMR) is a serious threat to human health. To avert the spread of AMR, fast reliable diagnostics tools that facilitate optimal antibiotic stewardship are an unmet need. In this regard,…

The issue of distinguishing between the same-source and different-source hypotheses based on various types of traces is a generic problem in forensic science. This problem is often tackled with Bayesian approaches, which are able to provide…

Machine Learning · Computer Science 2023-03-17 Isabelle Rivals , Cédric Sautier , Guillaume Cognon , Vincent Cuzuel

From the striped coats of zebras to the ripples in windblown sand, the natural world abounds with locally banded patterns. Such patterns have been of great interest throughout history, and, in the last twenty years, scientists in a wide…

comp-gas · Physics 2016-08-31 David A. Egolf , Ilarion V. Melnikov , Eberhard Bodenschatz

Olfaction -- how molecules are perceived as odors to humans -- remains poorly understood. Recently, the principal odor map (POM) was introduced to digitize the olfactory properties of single compounds. However, smells in real life are not…

Machine Learning · Computer Science 2025-01-28 Gary Tom , Cher Tian Ser , Ella M. Rajaonson , Stanley Lo , Hyun Suk Park , Brian K. Lee , Benjamin Sanchez-Lengeling

Identification of taxa can significantly be assisted by statistical classification based on trait measurements in two major ways; either individually or by phylogenetic (clustering) methods. In this paper we present a general Bayesian…

Applications · Statistics 2021-09-17 Måns Karlsson , Ola Hössjer

Recordings from neurons in the insects' olfactory primary processing center, the antennal lobe (AL), reveal that the AL is able to process the input from chemical receptors into distinct neural activity patterns, called olfactory neural…

Neurons and Cognition · Quantitative Biology 2014-08-27 Eli Shlizerman , Jeffrey A. Riffell , J. Nathan Kutz

Spatial point patterns are a commonly recorded form of data in ecology, medicine, astronomy, criminology, epidemiology and many other application fields. One way to understand their second order dependence structure is via their spectral…

Applications · Statistics 2023-08-24 Jake P. Grainger , Tuomas A. Rajala , David J. Murrell , Sofia C. Olhede

Many organisations manage service quality and monitor a large set devices and servers where each entity is associated with telemetry or physical sensor data series. Recently, various methods have been proposed to detect behavioural…

Social and Information Networks · Computer Science 2023-05-10 Len Feremans , Boris Cule , Bart Goethals

Bacteria often develop distinct phenotypes to adapt to environmental stress. In particular, they can produce biofilms, dense communities of bacteria that live in a complex extracellular matrix. Bacterial biofilms provide a safe haven from…

Quantitative Methods · Quantitative Biology 2025-08-29 Stephen Williams , Daravuth Cheam , Michele K. Nishiguchi , Suzanne S. Sindi , Shilpa Khatri , Erica M. Rutter

Automated deployment and management of Cloud applications relies on descriptions of their deployment topologies, often referred to as Infrastructure Code. As the complexity of applications and their deployment models increases, developers…

Microscopic Imaging Ellipsometry is an optical technique that uses an objective and sensing procedure to measure the ellipsometric parameters {\Psi} and {\Delta} in the form of microscopic maps. This technique is well known for being…

Biological Physics · Physics 2017-06-07 Mai Ibrahim Khaleel , Yu-Da Chen , Ching-Hang Chien , Yia-Chung Chang

An increasing number of potentially habitable terrestrial planets and planet candidates are found by ongoing planet search programs. The search for atmospheric signatures to establish planetary habitability and the presence of life might be…

Earth and Planetary Astrophysics · Physics 2015-06-12 P. von Paris , P. Hedelt , F. Selsis , F. Schreier , T. Trautmann

The prospect of new biological and industrial applications that require communication in micro-scale, encourages research on the design of bio-compatible communication networks using networking primitives already available in nature. One of…

Information Theory · Computer Science 2012-05-23 Arash Einolghozati , Mohsen Sardari , Ahmad Beirami , Faramarz Fekri