Related papers: On the rotation distance between binary trees
In this paper, we study the distribution of distances in random Apollonian network structures (RANS), a family of graphs which has a one-to-one correspondence with planar ternary trees. Using multivariate generating functions that express…
This paper presents a linear FPT algorithm to find a tree decomposition with a 2-approximation of the treewidth with a significantly smaller exponential dependence on the treewidth. The algorithm runs in time $O(\text{poly}(k) 81^k n)$,…
Recently, 2-protected nodes were studied in the context of ordered trees and $k$-trees. These nodes have a distance of at least 2 to each leaf. Here, we study digital search trees, which are binary trees, but with a different probability…
Here we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted, not necessarily binary phylogenetic trees on taxon set X in time (6^r.r!).poly(n)$, where n=|X|. The novelty of this approach is…
We define simple variants of zip trees, called zip-zip trees, which provide several advantages over zip trees, including overcoming a bias that favors smaller keys over larger ones. We analyze zip-zip trees theoretically and empirically,…
Computing the Fr\'{e}chet distance for surfaces is a surprisingly hard problem and the only known algorithm is limited to computing it between flat surfaces. We adapt this algorithm to create one for computing the Fr\'{e}chet distance for a…
We provide a systematic method to compute tree-level scattering amplitudes with spinning external states from amplitudes with scalar external states in arbitrary spacetime dimensions. We write down analytic answers for various scattering…
For $d\ge 2$ and an odd prime power $q$, consider the vector space $\mathbb{F}_q^d$ over the finite field $\mathbb{F}_q$, where the distance between two points $(x_1,\ldots,x_d)$ and $(y_1,\ldots,y_d)$ is defined as $\sum_{i=1}^d…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…
We present a bijection from planar reduced trees to planar rooted hypertrees, which extends Knuth's rotation correspondence between planar binary trees and planar rooted trees. The operadic counterpart of the new bijection is explained.…
We prove that the combinatorial distance between any two reduced expressions of a given permutation of {1, ..., n} in terms of transpositions lies in O(n^4), a sharp bound. Using a connection with the intersection numbers of certain curves…
We give a Large Deviation Principle (LDP) with explicit rate function for the distribution of vertex degrees in plane trees, a combinatorial model of RNA secondary structures. We calculate the typical degree distributions based on nearest…
We consider weighted generating functions of trees where the weights are products of functions of the sizes of the subtrees. This work begins with the observation that three different communities, largely independently, found substantially…
A spherical two-distance set is a finite collection of unit vectors in $\reals^n$ such that the set of distances between any two distinct vectors has cardinality two. We use the semidefinite programming method to compute improved estimates…
In this paper, we show that the treewidth of the $n \times n$ toroidal grid is $2n-1$ for all $n \ge 5$. This closes the gap between the previously known upper bound of $2n-1$ (Ellis and Warren, DAM 2008) and the lower bound of $2n-2$…
In the $k$-dispersion problem, we need to select $k$ nodes of a given graph so as to maximize the minimum distance between any two chosen nodes. This can be seen as a generalization of the independent set problem, where the goal is to…
Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…
The orientation of a massive binary undergoes a random walk due to gravitational encounters with field stars. The rotational diffusion coefficient for a circular-orbit binary is derived via scattering experiments. The binary is shown to…
This paper considers the enumeration of trees avoiding a contiguous pattern. We provide an algorithm for computing the generating function that counts n-leaf binary trees avoiding a given binary tree pattern t. Equipped with this counting…