Related papers: On the rotation distance between binary trees
Motivated by applications to low-rank matrix completion, we give a combinatorial characterization of the independent sets in the algebraic matroid associated to the collection of $m\times n$ rank-2 matrices and $n\times n$ skew-symmetric…
We consider binary rotation words generated by partitions of the unit circle to two intervals and give a precise formula for the number of such words of length n. We also give the precise asymptotics for it, which happens to be O(n^4). The…
In graph theory, a tree is one of the more popular families of graphs with a wide range of applications in computer science as well as many other related fields. While there are several distance measures over the set of all trees, we…
The early development of a zygote can be mathematically described by a developmental tree. To compare developmental trees of different species, we need to define distances on trees. If children cells after a division are not…
The tree edit distance is a natural dissimilarity measure between rooted ordered trees whose nodes are labeled over an alphabet $\Sigma$. It is defined as the minimum number of node edits (insertions, deletions, and relabelings) required to…
This paper provides a short and transparent solution for the covering cost of white-grey trees which play a crucial role in the algorithm of Bergeron {\it et al.}\ to compute the rearrangement distance between two multichromosomal genomes…
Given a set $\cal P$ of points in the Euclidean plane and two triangulations of $\cal P$, the flip distance between these two triangulations is the minimum number of flips required to transform one triangulation into the other.…
A vertex subset of a graph is called a distance-$k$ independent set if the distance between any two of its distinct vertices is at least $k + 1$. For all $n,k \geq 1$, we determine the minimum possible number of inclusion-wise maximal…
We consider the rooted trees which not have isomorphic representation and introduce a conception of complexity a natural number also. The connection between quantity such trees with $n$ edges and a complexity of natural number $n$ is…
We determine the maximum distance between any two of the center, centroid, and subtree core among trees with a given order. Corresponding results are obtained for trees with given maximum degree and also for trees with given diameter. The…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
We show that for every $k$, the probability that a randomly selected vertex of a random binary search tree on $n$ nodes is at distance $k-1$ from the closest leaf converges to a rational constant $c_k$ as $n$ goes to infinity.
Let $T_n$ denote the binary tree of depth $n$ augmented by an extra edge connected to its root. Let $C_n$ denote the cover time of $T_n$ by simple random walk. We prove that $\sqrt{ \mathcal{C}_{n} 2^{-(n+1) } } - m_n$ converges in…
This paper investigates the behaviour of rotating binaries. A rotation by $r$ digits to the left of a binary number $B$ exhibits in particular cases the divisibility $l\mid N_1(B)\cdot r+1$, where $l$ is the bit-length of $B$ and $N_1(B)$…
Peca suggested in a recent paper on the arxiv to consider binary butterfly trees and their Horton-Strahler numbers. The trees are obtained by glueing two binary trees together in a special way; the results are again binary trees but with a…
Tree edit distance is a well-studied measure of dissimilarity between rooted trees with node labels. It can be computed in $O(n^3)$ time [Demaine, Mozes, Rossman, and Weimann, ICALP 2007], and fine-grained hardness results suggest that the…
A tanglegram consists of two rooted binary trees and a perfect matching between their leaves, and a planar tanglegram is one that admits a layout with no crossings. We show that the problem of generating planar tanglegrams uniformly at…
We study distorted metrics on binary trees in the context of phylogenetic reconstruction. Given a binary tree $T$ on $n$ leaves with a path metric $d$, consider the pairwise distances $\{d(u,v)\}$ between leaves. It is well known that these…
There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks, or cancerous cells in tumor progression trees.…
We consider a natural notion of search trees on graphs, which we show is ubiquitous in various areas of discrete mathematics and computer science. Search trees on graphs can be modified by local operations called rotations, which generalize…