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Animal morphogenesis often involves significant shape changes of epithelial tissue sheets. Great progress has been made in understanding the underlying cellular driving forces and their coordination through biomechanical feedback loops.…

Soft Condensed Matter · Physics 2024-09-23 Nikolas H. Claussen , Fridtjof Brauns

During organogenesis tissue grows and deforms. The growth processes are controlled by diffusible proteins, so-called morphogens. Many different patterning mechanisms have been proposed. The stereotypic branching program during lung…

Quantitative Methods · Quantitative Biology 2017-10-10 Lucas D. Wittwer , Michael Peters , Sebastian Aland , Dagmar Iber

Growth pattern dynamics lie at the heart of morphogenesis. Here, we investigate the growth of plant leaves. We compute the conformal transformation that maps the contour of a leaf at a given stage onto the contour of the same leaf at a…

Tissues and Organs · Quantitative Biology 2016-11-23 Karen Alim , Shahaf Armon , Boris I. Shraiman , Arezki Boudaoud

Rapid environmental change and advances in data-driven analysis highlight the need not only to use computational tools, but also to foster understanding of the natural world and inspire creativity. Photosynthesis, the process that fuels…

Employing an effective cellular automata model, we investigate and analyze the build-up and erosion of soil. Depending on the strategy employed for handling agricultural production, in many cases we find a critical dependence on the…

Cellular Automata and Lattice Gases · Physics 2015-06-16 Klaus Lichtenegger , Wilhelm Schappacher

In general. automated farming systems make decisions based on static models built from the properties of the plant. in the contrast, irrigation decisions in our suggested method are dynamically changing environmental conditions. the model"s…

Systems and Control · Electrical Eng. & Systems 2023-04-18 Kawsalyaa Manivannan , Bharathi Sankar

Monitoring plantations is crucial for crop management and producing healthy harvests. Unmanned Aerial Vehicles (UAVs) have been used to collect multispectral images that aid in this monitoring. However, given the number of hectares to be…

Computer Vision and Pattern Recognition · Computer Science 2024-09-17 Felipe A. Lopes , Vasit Sagan , Flavio Esposito

We describe a hybrid agent-based model and simulation of urban morphogenesis. It consists of a cellular automata grid coupled to a dynamic network topology. The inherently heterogeneous properties of urban structure and function are taken…

Multiagent Systems · Computer Science 2016-12-28 Juste Raimbault , Arnaud Banos , René Doursat

This paper introduces a continuous model for Multi-cellular Developmental Design. The cells are fixed on a 2D grid and exchange "chemicals" with their neighbors during the growth process. The quantity of chemicals that a cell produces, as…

Artificial Intelligence · Computer Science 2007-05-23 Alexandre Devert , Nicolas Bredèche , Marc Schoenauer

The growth of plants is a hydromechanical phenomenon in which cells enlarge by absorbing water, while their walls expand and remodel under turgor-induced tension. In multicellular tissues, where cells are mechanically interconnected,…

Biological Physics · Physics 2025-09-09 Hadrien Oliveri , Ibrahim Cheddadi

We argue that embryological morphogenesis provides a model of how massive swarms of microscopic agents can be coordinated to assemble complex, multiscale hierarchical structures. This is accomplished by understanding natural morphogenetic…

Multiagent Systems · Computer Science 2019-08-26 Bruce J. MacLennan , Allen C. McBride

Diabetes is a chronic condition, considered one of the civilization diseases, that is characterized by sustained high blood sugar levels. There is no doubt that more and more people is going to suffer from diabetes, hence it is crucial to…

Other Quantitative Biology · Quantitative Biology 2024-05-21 Kamila Barylska , Anna Gogolińska

This work deals with the portability of greenhouse models, as we believe that this is a challenge to their practical usage in control strategies under production conditions. We address this task by means of adaptive neural networks, which…

Other Computer Science · Computer Science 2019-08-13 Luis Miranda , Guido Schillaci

Mathematical models of biological growth commonly attempt to distinguish deformation due to growth from that due to mechanical stresses through a hypothesised multiplicative decomposition of the deformation gradient. Here we demonstrate…

Mathematical Physics · Physics 2012-10-29 Isaac Vikram Chenchiah , Patrick D. Shipman

Logarithmic growth-rates are fundamental observables for describing ecological systems and the characterization of their distributions with analytical techniques can greatly improve their comprehension. Here a neutral model based on a…

Populations and Evolution · Quantitative Biology 2025-01-24 E. Brigatti , S. Azaele

Cultivating oleaginous microalgae in specific culturing devices such as raceways is seen as a future way to produce biofuel. The complexity of this process coupling non linear biological activity to hydrodynamics makes the optimization…

Numerical Analysis · Mathematics 2012-09-05 Olivier Bernard , Anne-Celine Boulanger , Marie-Odile Bristeau , Jacques Sainte-Marie

During the morphogenesis of tissues and tumors, cells often interact with neighbors with different mechanical properties, but the understanding of its role is lacking. We use active Brownian Dynamics simulations to study a model co-culture…

Soft Condensed Matter · Physics 2021-01-07 Supravat Dey , Moumita Das

Microtubule dynamics is largely influenced by nucleotide hydrolysis and the resultant tubulin configuration changes. The GTP cap model has been proposed to interpret the stabilizing mechanism of microtubule growth from the view of…

Biological Physics · Physics 2015-05-30 Xiang-Ying Ji , Xi-Qiao Feng

Most real systems are growing. In order to model the evolution of real systems, many growing network models have been proposed to reproduce some specific topology properties. As the structure strongly influences the network function,…

Physics and Society · Physics 2015-05-28 Y. Wang , A. Zeng , Z. Di , Y. Fan

Precise semantic segmentation of crops and weeds is necessary for agricultural weeding robots. However, training deep learning models requires large annotated datasets, which are costly to obtain in real fields. Synthetic data can reduce…

Computer Vision and Pattern Recognition · Computer Science 2025-11-05 Garen Boyadjian , Cyrille Pierre , Johann Laconte , Riccardo Bertoglio