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The orientation of cell division is a major determinant of three-dimensional plant morphogenesis. Whether and how a simple division orientation rule explains the establishment of symmetric body plans is a fundamental question. Testing such…

Cell Behavior · Quantitative Biology 2026-05-14 Naoya Kamamoto , Koichi Fujimoto

Poplar is one of the best fast-growing trees in the world, widely used for windbreak and wood product. Although architecture of poplar has direct impact on its applications, it has not been descried in previous poplar models, probably…

Dynamical Systems · Mathematics 2010-12-16 Dongxiang Liu , Meng Zhen Kang , Véronique Letort , Meijun Xing , Yang Gang , Xinyuan Huang , Weiqun Cao

We present a specialized procedural model for generating synthetic agricultural scenes, focusing on soybean crops, along with various weeds. This model is capable of simulating distinct growth stages of these plants, diverse soil…

Research into large-scale crop monitoring has flourished due to increased accessibility to satellite imagery. This review delves into previously unexplored and under-explored areas in sugarcane health monitoring and disease/pest detection…

Computer Vision and Pattern Recognition · Computer Science 2025-03-10 Ethan Kane Waters , Carla Chia-Ming Chen , Mostafa Rahimi Azghadi

The cultivated strawberry Fragaria ananassa Duch. is widely planted in greenhouses in China. Its production heavily depends on pollination services. Compared with artificial pollination, bee pollination can significantly improve fruit…

Populations and Evolution · Quantitative Biology 2022-10-27 Zhihao Cao , Hongchun Qu

Image-based crop growth modeling can substantially contribute to precision agriculture by revealing spatial crop development over time, which allows an early and location-specific estimation of relevant future plant traits, such as leaf…

Computer Vision and Pattern Recognition · Computer Science 2024-06-25 Lukas Drees , Dereje T. Demie , Madhuri R. Paul , Johannes Leonhardt , Sabine J. Seidel , Thomas F. Döring , Ribana Roscher

Crop yield prediction typically involves the utilization of either theory-driven process-based crop growth models, which have proven to be difficult to calibrate for local conditions, or data-driven machine learning methods, which are known…

Medicines and agricultural biocides are often discovered using large phenotypic screens across hundreds of compounds, where visible effects of whole organisms are compared to gauge efficacy and possible modes of action. However, such…

Biological Physics · Physics 2022-01-19 Henry Cavanagh , Andreas Mosbach , Gabriel Scalliet , Rob Lind , Robert G. Endres

A numerical model for mixotrophic phytoplankton is described in this paper. In contrast with traditional approach where nutrient uptake rates are constrained by a predefined growth rate, this model uses empirical traits to compute nutrient…

Biological Physics · Physics 2021-06-16 My Ha Dao

Indoor gardening within sustainable buildings offers a transformative solution to urban food security and environmental sustainability. By 2030, urban farming, including Controlled Environment Agriculture (CEA) and vertical farming, is…

Computer Vision and Pattern Recognition · Computer Science 2025-03-31 Seyed Hamidreza Nabaei , Zeyang Zheng , Dong Chen , Arsalan Heydarian

One of the major challenges in biology concerns the integration of data across length and time scales into a consistent framework: how do macroscopic properties and functionalities arise from the molecular regulatory networks - and how can…

Computational Engineering, Finance, and Science · Computer Science 2015-10-20 Dagmar Iber , Zahra Karimaddini , Erkan Ünal

This article focuses on the development of the method for the genetic classification of agamospermous reproduction types in plants using sugar beet as an example. The classification feasibility is ensured by the use of isozymes as genetic…

Genomics · Quantitative Biology 2014-01-03 Svetlana Sergeevna Kirikovich , Evgenii Vladimirovich Levites

The process of morphogenesis is an evolution of the shape of an organism together with the differentiation of its parts. This process encompasses numerous biological processes ranging from embryogenesis to regeneration following crisis such…

Other Quantitative Biology · Quantitative Biology 2019-09-23 N. Bessonov , O. Butuzova , A. Minarsky , R. Penner , C. Soule , A. Tosenberger , N. Morozova

Change monitoring is an essential task for cranberry farming as it provides both breeders and growers with the ability to analyze growth, predict yield, and make treatment decisions. However, this task is often done manually, requiring…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Ronan John , Anis Chihoub , Ryan Meegan , Gina Sidelli , Jeffery Neyhart , Peter Oudemans , Kristin Dana

Mathematical Modelling has a long history in developmental biology. Advances in experimental techniques and computational algorithms now permit the development of increasingly more realistic models of organogenesis. In particular, 3D…

Computational Engineering, Finance, and Science · Computer Science 2014-08-08 Zahra Karimaddini , Erkan Unal , Denis Menshykau , Dagmar Iber

Morphogenesis is a tightly regulated process that has been studied for decades. We are developing data-based and image-basd mechanistic models for a range of developmental processes with a view to integrate the available knowledge and to…

Quantitative Methods · Quantitative Biology 2013-09-10 Denis Menshykau , Srivathsan Adivarahan , Philipp Germann , Lisa Lermuzeaux , Dagmar Iber

The adoption of agroecological practices will be crucial to address the challenges of climate change and biodiversity loss. Such practices favor the cultivation of plants in complex mixtures with layouts differing from the monoculture…

Populations and Evolution · Quantitative Biology 2024-09-26 Julian Talbot , Pascal Viot , David Colliaux

Tumour spheroids have been the focus of a variety of mathematical models, ranging from Greenspan's classical study of the 1970s through to contemporary agent-based models. Of the many factors that regulate spheroid growth, mechanical…

Tissues and Organs · Quantitative Biology 2022-12-22 Benjamin J. Walker , Giulia L. Celora , Alain Goriely , Derek E. Moulton , Helen M. Byrne

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

Modeling the spontaneous evolution of morphology in natural systems and its preservation by proportionate growth remains a major scientific challenge. Yet, it is conceivable that if the basic mechanisms of growth and the coupled kinetic…

Soft Condensed Matter · Physics 2020-12-30 Virginia von Streng , Rami Abi-Akl , Bianca Giovanardi , Tal Cohen