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The mitogen-activated protein kinase (MAPK) signaling cascade, an evolutionarily conserved motif present in all eukaryotic cells, is involved in coordinating critical cell-fate decisions, regulating protein synthesis, and mediating learning…

Subcellular Processes · Quantitative Biology 2024-06-11 Tanmay Mitra , Shakti N. Menon , Sitabhra Sinha

Cell migration in fibreous extracellular matrix (ECM) is crucial to many physiological and pathological processes such as tissue regeneration, immune response and cancer progression. During migration, individual cells can generate active…

Cell Behavior · Quantitative Biology 2019-10-16 Yu Zheng , Hanqing Nan , Qihui Fan , Xiaochen Wang , Liyu Liu , Ruchuan Liu , Fangfu Ye , Bo Sun , Yang Jiao

We propose a new self-organizing mechanism behind the emergence of memory in which temporal sequences of stimuli are transformed into spatial activity patterns. In particular, the memory emerges despite the absence of temporal correlations…

Disordered Systems and Neural Networks · Physics 2009-11-07 Konstantin Klemm , Preben Alstrom

The spiking activity of the hippocampal place cells plays a key role in producing and sustaining an internalized representation of the ambient space---a cognitive map. These cells do not only exhibit location-specific spiking during…

Neurons and Cognition · Quantitative Biology 2018-11-05 Andrey Babichev , Dmitriy Morozov , Yuri Dabaghian

We present emergent mechanical memory storage behavior in soft cellular materials. The cellular materials are a network of soft hyperelastic rods which store shape changes, specifically local indentation. This happens under an applied…

Soft Condensed Matter · Physics 2023-10-03 Harsh Jain , Shankar Ghosh

Memory is often defined as the mental capacity of retaining information about facts, events, procedures and more generally about any type of previous experience. Memories are remembered as long as they influence our thoughts, feelings, and…

Neurons and Cognition · Quantitative Biology 2017-06-16 Stefano Fusi

The neural mechanism of memory has a very close relation with the problem of representation in artificial intelligence. In this paper a computational model was proposed to simulate the network of neurons in brain and how they process…

Neurons and Cognition · Quantitative Biology 2020-12-02 Hui Wei

Late long-term potentiation (L-LTP) appears essential for the formation of long-term memory, with memories at least partly encoded by patterns of strengthened synapses. How memories are preserved for months or years, despite molecular…

Neurons and Cognition · Quantitative Biology 2015-05-13 Paul Smolen

Detailed knowledge of mechanical parameters such as cell elasticity, stiffness of the growth substrate, or traction stresses generated during axonal extensions is essential for understanding the mechanisms that control neuronal growth. Here…

Biological Physics · Physics 2013-04-05 Elise Spedden , James D. White , Elena N. Naumova , David L. Kaplan , Cristian Staii

Many biological, social and man-made systems are better described in terms of temporal networks, i.e. networks whose links are only present at certain points in time, rather than by static ones. In particular, it has been found that…

Physics and Society · Physics 2019-05-22 Oliver E. Williams , Fabrizio Lillo , Vito Latora

A possible clarification of memory effect observed in crack patterns of drying pastes [A. Nakahara and Y. Matsuo, J. Phys. Soc. Japan 74, 1362 (2005)] is presented in terms of a macroscopic elastoplastic model of isotropic pastes. We study…

Soft Condensed Matter · Physics 2008-06-04 Takeshi Ooshida

Recent experiments in various cell types have shown that two-dimensional tissues often display local nematic order, with evidence of extensile stresses manifest in the dynamics of topological defects. Using a mesoscopic model where tissue…

Soft Condensed Matter · Physics 2021-03-30 Farzan Vafa , Mark J. Bowick , Boris I. Shraiman , M. Cristina Marchetti

Memory is inherently entangled with prediction and planning. Flexible behavior in biological and artificial agents depends on the interplay of learning from the past and predicting the future in ever-changing environments. This chapter…

Artificial Intelligence · Computer Science 2024-02-21 Ida Momennejad

We numerically investigate the stress distribution of a paste when an external oscillation is applied. The paste memorizes the oscillation as plastic deformation. Due to the plastic deformation, the residual stress remains after the…

Soft Condensed Matter · Physics 2021-09-03 Jumpei Morita , Michio Otsuki

Synaptic plasticity is the capacity of a preexisting connection between two neurons to change in strength as a function of neural activity. Because synaptic plasticity is the major candidate mechanism for learning and memory, the…

Neurons and Cognition · Quantitative Biology 2015-05-05 Maurizio De Pittà , Nicolas Brunel , Andrea Volterra

Traditionally, physical models of associative memory assume conditions of equilibrium. Here, we consider a prototypical oscillator model of associative memory and study how active noise sources that drive the system out of equilibrium, as…

Disordered Systems and Neural Networks · Physics 2023-07-26 Matthew Du , Agnish Kumar Behera , Suriyanarayanan Vaikuntanathan

Biological cells are able to adapt their behaviour in response to environmental cues. Durotaxis is a phenomenon in which cells adjust their migration depending on the mechanical properties of a surrounding substrate. Although durotaxis has…

Biological Physics · Physics 2026-05-11 Sohei Nakamura , Mitsusuke Tarama

Adult neurogenesis has long been documented in the vertebrate brain, and recently even in humans. Although it has been conjectured for many years that its functional role is related to the renewing of memories, no clear mechanism as to how…

Disordered Systems and Neural Networks · Physics 2007-05-23 Guillermo A. Cecchi , Leopoldo T. Petreanu , Arturo Alvarez-Buylla , Marcelo O. Magnasco

Molecular motors are specialized proteins which perform active, directed transport of cellular cargoes on cytoskeletal filaments. In many cases, cargo motion powered by motor proteins is found to be bidirectional, and may be viewed as a…

Subcellular Processes · Quantitative Biology 2015-06-16 Deepak Bhat , Manoj Gopalakrishnan

We view random walks as the paths of foraging animals, perhaps searching for food or avoiding predators while forming a mental map of their surroundings. The formation of such maps requires them to memorise the locations they have visited.…

Probability · Mathematics 2018-08-24 Michal Gnacik , Abdulrahman Alsolami , James Burridge