Related papers: Pattern avoidance in binary trees

In this paper we investigate the geometry of a discrete Bayesian network whose graph is a tree all of whose variables are binary and the only observed variables are those labeling its leaves. We provide the full geometric description of…

We describe arithmetic computations in terms of operations on some well known free algebras (S1S, S2S and ordered rooted binary trees) while emphasizing the common structure present in all them when seen as isomorphic with the set of…

Jel\'inek, Mansour, and Shattuck studied Wilf-equivalence among pairs of patterns of the form $\{\sigma,\tau\}$ where $\sigma$ is a set partition of size $3$ with at least two blocks. They obtained an upper bound for the number of…

In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…

A $B$-tree is a type of search tree where every node (except possibly for the root) contains between $m$ and $2m$ keys for some positive integer $m$, and all leaves have the same distance to the root. We study sequences of $B$-trees that…

We show that cyclic permutations avoiding $321$ are precisely those permutations whose image under the fundamental bijection avoid a set of vincular patterns. We do this by using pattern functions and arrow patterns, in combination with the…

An important problem in geometric computing is defining and computing similarity between two geometric shapes, e.g. point sets, curves and surfaces, etc. Important geometric and topological information of many shapes can be captured by…

Tree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, R\'acz, and Rashtchian used combinatorial…

In this paper, we consider the problem of avoiding a single vincular pattern of length three by derangements in the flattened sense and find explicit formulas for the generating functions enumerating members of each corresponding avoidance…

Distance-based approaches in phylogenetics such as Neighbor-Joining are a fast and popular approach for building trees. These methods take pairs of sequences from them construct a value that, in expectation, is additive under a stochastic…

Given a gene tree topology and a species tree topology, a coalescent history represents a possible mapping of the list of gene tree coalescences to associated branches of a species tree on which those coalescences take place. Enumerative…

The ongoing explosion of genome sequence data is transforming how we reconstruct and understand the histories of biological systems. Across biological scales, from individual cells to populations and species, trees-based models provide a…

This paper is continuation of the study of the 1-box pattern in permutations introduced by the authors in \cite{kitrem4}. We derive a two-variable generating function for the distribution of this pattern on 132-avoiding permutations, and…

This work concerns a construction of pattern-avoiding inversion sequences from right to left we call the generating tree growing on the left. We first apply this construction to inversion sequences avoiding 201 and 210, resulting in a new…

Following a remark of Lawvere, we explicitly exhibit a particularly elementary bijection between the set T of finite binary trees and the set T^7 of seven-tuples of such trees. "Particularly elementary" means that the application of the…

We show that an algorithmic construction of sequences of recursive trees leads to a direct proof of the convergence of random recursive trees in an associated Doob-Martin compactification; it also gives a representation of the limit in…

We investigate various connections between the 0-Hecke monoid, Catalan monoid, and pattern avoidance in permutations, providing new tools for approaching pattern avoidance in an algebraic framework. In particular, we characterize…

Let $\mathcal{C}_n$ denote the set of words $w=w_1\cdots w_n$ on the alphabet of positive integers satisfying $w_{i+1}\leq w_i+1$ for $1 \leq i \leq n-1$ with $w_1=1$. The members of $\mathcal{C}_n$ are known as Catalan words and are…

A permutation $\pi$ is said to avoid a chain $(\sigma:\tau)$ of patterns if $\pi$ avoids $\sigma$ and $\pi^2$ avoids $\tau.$ In this paper, we define a notion of pattern avoidance for compositions of positive integers and use that idea to…

Given two binary trees on $N$ labeled leaves, the quartet distance between the trees is the number of disagreeing quartets. By permuting the leaves at random, the expected quartets distance between the two trees is…