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This study reveals that, in strong coulomb coupling regime, bending a straight and fully overcharged DNA (up to its maximal acceptance by multivalent counterions) to a circle releases some of the adsorbed (correlated)counterions but still…

Soft Condensed Matter · Physics 2013-07-31 Arup K Mukherjee

Effects of sequence disorder on looping and cyclization of the double-stranded DNA are studied theoretically. Both random intrinsic curvature and inhomogeneous bending rigidity are found to result in a remarkably wide distribution of…

Soft Condensed Matter · Physics 2013-05-29 Yuri O. Popov , Alexei V. Tkachenko

Graphene nanopore based sensor devices are exhibiting the great potential for the detection of DNA. To understand the fundamental aspects of DNA translocating through a graphene nanopore, in this work, molecular dynamics (MD) simulations…

Biological Physics · Physics 2012-11-30 Wenping Lv , Maodu Chen , Renan Wu

The macroscopic curvature induced in double helical B-DNA by regularly repeated adenine tracts (A-tracts) is a long known, but still unexplained phenomenon. This effect plays a key role in DNA studies because it is unique in the amount and…

Biological Physics · Physics 2007-05-23 Alexey K. Mazur

Some proteins can find their targets on DNA faster than by pure diffusion in the three-dimensional cytoplasm, through the process of facilitated diffusion: They can loosely bind to DNA and temporarily slide along it, thus being guided by…

Biomolecules · Quantitative Biology 2024-02-27 Michael A. Lomholt , Ralf Metzler

Mixing of 56Ni, whose nuclear decay energy is a major luminosity source in stripped-envelope supernovae, is known to affect the observational properties of stripped-envelope supernovae such as light-curve and color evolution. Here we…

High Energy Astrophysical Phenomena · Physics 2020-09-07 Takashi J. Moriya , Akihiro Suzuki , Tomoya Takiwaki , Yen-Chen Pan , Sergei I. Blinnikov

We present some of our research activities dedicated to doped silica-based optical fibers, aiming at understanding the spectral properties of luminescent ions, such as rare-earth and transition metal elements. The influence of the local…

Optics · Physics 2009-11-10 Bernard Dussardier , Wilfried Blanc , Gérard Monnom

Temperature-controlled-growth of silver nanoclusters in soda glass matrix is investigated by low-frequency Raman scattering spectroscopy. Growth of the nanoclusters is ascribed to the diffusion-controlled precipitation of silver atoms due…

Materials Science · Physics 2009-11-10 P. Gangopadhyay , P. Magudapathy , R. Kesavamoorthy , B. K. Panigrahi , K. G. M. Nair , P. V. Satyam

There is both observational and theoretical evidence that the ejecta of core-collapse supernovae (SNe) are structured. Rather than being smooth and homogeneous, the material is made of over-dense and under-dense regions of distinct…

Solar and Stellar Astrophysics · Physics 2018-11-07 Luc Dessart , D. John Hillier , Kevin D. Wilk

We investigate the effect of exciton coupling on the optical absorption spectrum of polymer molecules under conditions of strong inhomogeneous broadening. We demonstrate that the dependence of the maximum in the rescaled absorption spectrum…

Chemical Physics · Physics 2009-11-13 A. L. Burin , J. A. Dickman , D. B. Uskov , C. F. F. Hebbard , G. C. Schatz

The dependence of surface-enhanced Raman scattering (SERS) spectra on the precise axial position of the laser focus relative to a solid nanostructured substrate has received little to no attention in the literature. Here we show this…

Optics · Physics 2026-03-31 Fran Nekvapil , Cosmin Farcău

Single gold nanoparticles can act as nanoantennas for enhancing the fluorescence of emitters in their near-fields. Here we present experimental and theoretical studies of scanning antenna-based fluorescence microscopy as a function of the…

Diamond nanocrystals containing Nitrogen-Vacancy (NV) color centers have been used in recent years as fluorescent probes for near-field and cellular imaging. In this work we report that an infrared (IR) pulsed excitation beam can quench the…

Optics · Physics 2015-06-15 N. D. Lai , O. Faklaris , D. Zheng , V. Jacques , H. -C. Chang , J. -F. Roch , F. Treussart

Damped Lyman-alpha absorbers are believed to be associated with galactic disks. We show that gravitational lensing can therefore affect the statistics of these systems. First, the magnification bias due to lensing raises faint QSOs above a…

Astrophysics · Physics 2009-10-28 Matthias Bartelmann , Abraham Loeb

Interest in studying the interaction of small molecules with DNA is caused by the need to develop new, highly effective, and low-toxic drugs for cancer treatment. The strong and highly specific binding of thionine with DNA makes it a…

Biological Physics · Physics 2026-04-29 Evgeniya Usenko , Alexander Glamazda , Vladimir Valeev , Victor Karachevtsev

The effect of heterogeneous sequence composition on the denaturation of double stranded DNA is investigated. The resulting pair-binding energy variation is found to have a negligible effect on the critical properties of the smooth second…

Statistical Mechanics · Physics 2009-10-30 D. Cule , T. Hwa

The fluorescence intensity and quadrature spectra from a two-level atom embedded in a photonic bandgap crystal and resonantly driven by a classical pump light are calculated. The non-Markovian nature of the problem caused by the non-uniform…

Quantum Physics · Physics 2007-05-23 Ray-Kuang Lee , Yinchieh Lai

We present a detailed study of the gain length in an active medium obtained by doping of DNA strands with DCM dye molecules. The superior thermal stability of the composite and its low quenching, permits to obtain optical gain coefficient…

Atomic Force Microscopy analysis is employed to study the geometrical and topological properties of $3000$kbp DNA molecules fixed in mica substrates with $MgCl_{2}$. We found that the aggregates on the substrate surface for certain salt…

Soft Condensed Matter · Physics 2017-06-09 Elsa de la Calleja , R. F Bazoni , M. S. Rocha , Marcia Barbosa

We consider a two-level atom stimulated by a coherent monochromatic laser and we study how to enhance the squeezing of the fluorescence light and of the atom itself in the presence of a Wiseman-Milburn feedback mechanism, based on the…

Quantum Physics · Physics 2009-01-21 A. Barchielli , M. Gregoratti , M. Licciardo
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