Related papers: Common Permutation Problem
We investigate the complexity of a puzzle that turns out to be NL-complete.
Longest Run Subsequence is a problem introduced recently in the context of the scaffolding phase of genome assembly (Schrinner et al., WABI 2020). The problem asks for a maximum length subsequence of a given string that contains at most one…
The 2-LCPS problem, first introduced by Chowdhury et al. [Fundam. Inform., 129(4):329-340, 2014], asks one to compute (the length of) a longest palindromic common subsequence between two given strings $A$ and $B$. We show that the 2-LCPS…
Let us call a sequence of numbers heapable if they can be sequentially inserted to form a binary tree with the heap property, where each insertion subsequent to the first occurs at a leaf of the tree, i.e. below a previously placed number.…
We study a new variant of the string matching problem called cross-document string matching, which is the problem of indexing a collection of documents to support an efficient search for a pattern in a selected document, where the pattern…
We show that two important problems that have applications in computational biology are ASP-complete, which implies that, given a solution to a problem, it is NP-complete to decide if another solution exists. We show first that a variation…
A partial complement of the graph $G$ is a graph obtained from $G$ by complementing all the edges in one of its induced subgraphs. We study the following algorithmic question: for a given graph $G$ and graph class $\mathcal{G}$, is there a…
Can a list of binary strings be ordered so that consecutive strings differ in a single bit? Can a list of permutations be ordered so that consecutive permutations differ by a swap? Can a list of non-crossing set partitions be ordered so…
Let $\Gamma$ be a finite, undirected, connected, simple graph. We say that a matching $\mathcal{M}$ is a \textit{permutable $m$-matching} if $\mathcal{M}$ contains $m$ edges and the subgroup of $\text{Aut}(\Gamma)$ that fixes the matching…
${ NP}$-complete problem "Hamiltonian cycle"\ for graph $G=(V,E)$ is extended to the "Hamiltonian Complement of the Graph"\ problem of finding the minimal cardinality set $H$ containing additional edges so that graph $G=(V,E\cup H)$ is…
We show that the problem of deciding whether the vertex set of a graph can be covered with at most two bicliques is in NP$\cap$coNP. We thus almost determine the computational complexity of a problem whose status has remained open for quite…
We consider first-order logic over the subword ordering on finite words, where each word is available as a constant. Our first result is that the $\Sigma_1$ theory is undecidable (already over two letters). We investigate the decidability…
We study the complexity of the problem of searching for a set of patterns that separate two given sets of strings. This problem has applications in a wide variety of areas, most notably in data mining, computational biology, and in…
Rich words are characterized by containing the maximum possible number of distinct palindromes. Several characteristic properties of rich words have been studied; yet the analysis of repetitions in rich words still involves some interesting…
We consider the problem of storing a dynamic string $S$ over an alphabet $\Sigma=\{\,1,\ldots,\sigma\,\}$ in compressed form. Our representation supports insertions and deletions of symbols and answers three fundamental queries:…
The Promise Constraint Satisfaction Problem (PCSP) is a recently introduced vast generalization of the Constraint Satisfaction Problem (CSP). We investigate the computational complexity of a class of PCSPs beyond the most studied cases -…
A permutation class $C$ is splittable if it is contained in a merge of two of its proper subclasses, and it is 1-amalgamable if given two permutations $\sigma$ and $\tau$ in $C$, each with a marked element, we can find a permutation $\pi$…
The Shortest Superstring Problem (SSP) consists, for a set of strings S = {s_1,...,s_n}, to find a minimum length string that contains all s_i, 1 <= i <= k, as substrings. This problem is proved to be NP-Complete and APX-hard. Guaranteed…
In the nineties Immerman and Medina initiated the search for syn- tactic tools to prove NP-completeness. In their work, amongst several results, they conjecture that the NP-completeness of a problem defined by the conjunction of a sentence…
A permutation class $C$ is said to be splittable if there exist two proper subclasses $A, B \subsetneq C$ such that any $\sigma \in C$ can be red-blue colored so that the red (respectively, blue) subsequence of $\sigma$ is order isomorphic…