Related papers: Common Permutation Problem
Arc-annotated sequences are useful in representing the structural information of RNA and protein sequences. The longest arc-preserving common subsequence problem has been introduced as a framework for studying the similarity of…
We consider the general problem of the Longest Common Subsequence (LCS) on weighted sequences. Weighted sequences are an extension of classical strings, where in each position every letter of the alphabet may occur with some probability.…
The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. Palindrome is a word which reads the same forward as it does backward. The {\em longest common palindromic subsequence (LCPS)}…
In this paper, we revisit the much studied problem of Pattern Matching with Swaps (Swap Matching problem, for short). We first present a graph-theoretic model, which opens a new and so far unexplored avenue to solve the problem. Then, using…
A sequence of reversals that takes a signed permutation to the identity is perfect if at no step a common interval is broken. Determining a parsimonious perfect sequence of reversals that sorts a signed permutation is NP-hard. Here we show…
We show that the subset sum problem, the knapsack problem and the rational subset membership problem for permutation groups are NP-complete. Concerning the knapsack problem we obtain NP-completeness for every fixed $n \geq 3$, where $n$ is…
The binary string matching problem consists in finding all the occurrences of a pattern in a text where both strings are built on a binary alphabet. This is an interesting problem in computer science, since binary data are omnipresent in…
In this paper, we study some properties of a certain kind of permutation $\sigma$ over $\mathbb{F}_{2}^{n}$, where $n$ is a positive integer. The desired properties for $\sigma$ are: (1) the algebraic degree of each component function is…
The purpose of this note is to attach a name to a natural class of combinatorial problems and to point out that this class includes many important special cases. We also show that a simple problem of placing nonoverlapping labels on a…
The NP-complete problem Matching Cut is to decide if a graph has a matching that is also an edge cut of the graph. We prove new complexity results for Matching Cut restricted to $H$-free graphs, that is, graphs that do not contain some…
Correspondence homomorphisms are both a generalization of standard homomorphisms and a generalization of correspondence colourings. For a fixed target graph $H$, the problem is to decide whether an input graph $G$, with each edge labeled by…
A {\it superpattern} is a string of characters of length $n$ that contains as a subsequence, and in a sense that depends on the context, all the smaller strings of length $k$ in a certain class. We prove structural and probabilistic results…
We construct a hierarchy of supersymmetric string theories by showing that the general N-extended superstrings may be viewed as a special class of the (N+1)-extended superstrings. As a side result, we find a twisted (N+2) superconformal…
For each integer k >= 2, let F(k) denote the largest n for which there exists a permutation \sigma \in S_n, all of whose patterns of length k are distinct. We prove that F(k) = k + \lfloor \sqrt{2k-3} \rfloor + e_k, where e_k \in {-1,0} for…
The $\textbf{P}$ vs. $\textbf{NP}$ problem is an important problem in contemporary mathematics and theoretical computer science. Many proofs have been proposed to this problem. This paper proposes a theoretic proof for $\textbf{P}$ vs.…
We consider the problem of identifying tandem scattered subsequences within a string. Our algorithm identifies a longest subsequence which occurs twice without overlap in a string. This algorithm is based on the Hunt-Szymanski algorithm,…
We examine the open problem of finding the shortest string that contains each of the n! permutations of n symbols as contiguous substrings (i.e., the shortest superpermutation on n symbols). It has been conjectured that the shortest…
We consider a group-theoretic analogue of the classic subset sum problem. In this brief note, we show that the subset sum problem is NP-complete in the first Grigorchuk group. More generally, we show NP-hardness of that problem in weakly…
The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. LCS is a central problem in stringology and finds broad applications in text compression, error-detecting codes and biological…
We prove that the problem of reconstructing a permutation $\pi_1,\dotsc,\pi_n$ of the integers $[1\dotso n]$ given the absolute differences $|\pi_{i+1}-\pi_i|$, $i = 1,\dotsc,n-1$ is NP-complete. As an intermediate step we first prove the…